Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 0.0e+00 2128.6 1079 100.0
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 0.0e+00 1812.0 1109 84.6
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 0.0e+00 1761.5 1107 82.5
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 0.0e+00 1655.2 1101 77.7
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 0.0e+00 1654.4 1098 77.8
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 0.0e+00 1634.8 1113 76.5
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 0.0e+00 1532.7 936 83.4
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 0.0e+00 1512.3 1011 77.8
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 0.0e+00 1379.0 1102 68.1
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 0.0e+00 1284.6 1113 63.1
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 0.0e+00 1224.9 1129 59.9
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 3.7e-269 932.2 1212 45.6
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 3.1e-268 929.1 1219 45.8
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 1.0e-266 924.1 1193 46.8
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 4.2e-265 918.7 830 58.1
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 1.5e-259 900.2 1227 44.2
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 9.4e-257 891.0 1194 46.4
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 9.7e-254 880.9 1213 44.8
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 6.9e-252 874.8 941 50.8
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 7.2e-249 864.8 1220 42.5
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 1.0e-247 860.9 1186 44.5
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 3.9e-239 832.4 918 50.7
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 2.4e-236 823.2 923 50.4
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 7.7e-235 818.1 1209 42.6
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 3.8e-234 815.8 1243 40.9
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 1.6e-232 810.4 1091 44.6
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 4.7e-232 808.9 1221 42.3
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 1.8e-231 807.0 1272 40.0
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 1.3e-229 800.8 862 51.5
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 1.1e-225 787.7 954 47.9
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 2.2e-221 773.5 1216 41.4
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 9.1e-220 768.1 966 48.0
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 2.0e-219 766.9 1174 41.1
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.5e-217 760.8 1273 39.2
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 4.2e-217 759.2 932 46.9
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 5.5e-217 758.8 923 46.3
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 4.7e-216 755.7 1228 39.7
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 6.8e-215 751.9 821 50.7
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 7.5e-214 748.4 922 46.6
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 1.1e-212 744.6 922 47.2
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 1.6e-211 740.7 865 48.6
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 2.8e-208 729.9 819 48.1
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 9.5e-201 704.9 909 44.8
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 1.2e-200 704.5 715 52.7
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 3.6e-200 703.0 926 44.4
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 5.2e-199 699.1 827 47.4
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 1.2e-198 698.0 819 48.2
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 3.4e-198 696.4 955 44.1
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 3.4e-198 696.4 824 47.2
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 1.9e-196 690.6 1080 39.4
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 1.9e-196 690.6 821 48.4
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 5.6e-193 679.1 1192 38.3
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.4e-190 669.8 962 43.1
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 3.7e-189 666.4 1203 37.0
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 3.3e-185 653.3 1225 37.6
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 1.2e-184 651.4 962 42.5
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 2.4e-183 647.1 1151 37.0
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 8.9e-183 645.2 868 43.9
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 2.7e-179 633.6 811 45.9
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 8.7e-178 628.6 739 47.8
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.3e-168 598.2 927 39.3
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 2.4e-167 594.0 967 39.3
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 4.2e-156 556.6 644 48.4
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 1.7e-149 534.6 835 40.0
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 5.5e-148 529.6 872 37.3
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.6e-147 528.1 973 35.7
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 2.6e-142 510.8 942 36.0
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.8e-141 506.9 755 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 6.1e-139 499.6 974 35.0
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 5.3e-135 486.5 831 39.4
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 5.9e-134 483.0 656 42.7
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 7.9e-131 472.6 756 38.5
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 7.9e-131 472.6 512 50.8
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 2.3e-122 444.5 481 48.9
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 2.6e-121 441.0 430 53.5
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.5e-92 345.5 621 38.3
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 3.8e-64 251.1 391 40.9
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 6.6e-61 240.4 740 27.3
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 1.4e-58 232.6 882 26.6
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 5.8e-57 227.3 166 75.9
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 5.4e-55 220.7 314 39.5
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 2.3e-53 215.3 184 63.6
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 5.6e-52 210.7 193 57.0
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 2.2e-48 198.7 309 36.9
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 6.2e-43 180.6 221 44.8
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.8e-42 179.1 221 44.8
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 2.0e-41 175.6 221 44.3
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.0e-33 149.1 249 38.6
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 1.1e-26 126.7 192 38.0
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 2.6e-25 122.1 89 69.7
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 4.5e-25 121.3 76 81.6
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 6.5e-24 117.5 88 67.0
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 4.2e-23 114.8 101 56.4
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 5.5e-23 114.4 88 67.0
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 7.2e-23 114.0 90 67.8
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 3.6e-14 85.1 114 45.6
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 2.3e-13 82.4 670 22.2
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 2.8e-11 75.5 465 24.1
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 4.8e-11 74.7 59 57.6
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 8.2e-11 73.9 88 46.6
Carub.0006s3403 Capsella rubella HOM05D002999 ORTHO05D003137 4.2e-07 61.6 276 22.8
C03p37380 Brassica napus HOM05D002999 ORTHO05D003137 5.5e-07 61.2 278 24.1
A03p30680 Brassica napus HOM05D002999 ORTHO05D003137 7.2e-07 60.8 278 24.1
BcaC01g06713 Brassica carinata HOM05D002999 ORTHO05D003137 9.4e-07 60.5 278 24.1
BolC3t16030H Brassica oleracea HOM05D002999 ORTHO05D003137 9.4e-07 60.5 278 24.1
A09p02340 Brassica napus HOM05D002999 ORTHO05D003137 1.2e-06 60.1 276 22.1
C09p02460 Brassica napus HOM05D002999 ORTHO05D003137 1.2e-06 60.1 276 22.1
BolC9t53176H Brassica oleracea HOM05D002999 ORTHO05D003137 1.2e-06 60.1 276 22.1
BraA09t35883Z Brassica rapa HOM05D002999 ORTHO05D003137 1.2e-06 60.1 276 22.1
BcaB01g01989 Brassica carinata HOM05D002999 ORTHO05D003137 1.6e-06 59.7 276 22.1
BcaB01g01931 Brassica carinata HOM05D002999 ORTHO05D003137 2.1e-06 59.3 276 23.2
Sp6g03060 Schrenkiella parvula HOM05D002999 ORTHO05D003137 3.6e-06 58.5 276 23.9
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 3.6e-06 58.5 119 30.3


User provided reference genes

Program Settings