Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 3.3e-130 468.4 236 100.0
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 8.9e-120 433.7 238 92.4
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 9.9e-119 430.3 239 90.8
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 7.1e-117 424.1 239 90.4
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 3.3e-114 415.2 236 86.9
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 3.3e-114 415.2 236 86.9
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 3.3e-114 415.2 236 87.3
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 5.6e-114 414.5 236 86.9
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.1e-113 412.5 236 87.7
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.2e-108 396.7 239 83.3
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.6e-108 396.4 239 82.4
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.4e-101 371.3 236 82.2
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.7e-100 369.0 218 83.5
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.0e-99 367.1 236 79.7
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 7.6e-95 350.9 248 74.2
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 3.8e-94 348.6 223 78.5
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 1.4e-93 346.7 186 87.6
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 2.5e-93 345.9 186 87.6
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 7.1e-93 344.4 186 87.1
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 9.3e-93 344.0 186 87.1
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.6e-92 343.2 237 72.2
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 2.1e-92 342.8 186 87.1
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 4.6e-92 341.7 240 72.5
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 1.3e-91 340.1 186 86.0
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 3.0e-91 339.0 238 68.1
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 3.0e-91 339.0 238 68.1
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 3.9e-91 338.6 238 68.1
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.9e-90 336.3 239 72.8
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.3e-90 335.5 239 71.5
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 3.3e-90 335.5 230 71.3
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 7.4e-90 334.3 239 72.4
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.3e-89 333.6 230 71.7
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 2.1e-89 332.8 239 69.0
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 2.1e-89 332.8 236 71.6
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 2.1e-89 332.8 238 69.7
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 3.7e-89 332.0 243 69.5
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 8.2e-89 330.9 243 68.3
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.1e-88 330.5 236 70.8
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 3.1e-88 328.9 239 68.6
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 3.1e-88 328.9 241 67.2
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 5.3e-88 328.2 238 70.2
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 6.9e-88 327.8 239 69.9
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 9.0e-88 327.4 232 71.6
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.0e-87 326.2 205 76.6
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 3.4e-87 325.5 240 70.8
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 5.8e-87 324.7 244 67.2
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.7e-86 323.2 243 68.3
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.2e-86 322.8 225 70.2
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 2.9e-86 322.4 229 70.7
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.8e-86 322.0 243 65.8
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 3.8e-86 322.0 202 80.7
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 3.8e-86 322.0 216 72.7
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 5.0e-86 321.6 216 72.2
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 6.5e-86 321.2 242 69.0
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 6.5e-86 321.2 217 71.0
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.9e-85 319.7 237 67.1
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 2.5e-85 319.3 215 71.6
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 3.2e-85 318.9 239 67.4
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 4.2e-85 318.5 241 68.5
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 5.5e-85 318.2 243 65.4
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 5.5e-85 318.2 229 69.4
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 5.5e-85 318.2 236 65.3
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 1.2e-84 317.0 231 68.4
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.1e-84 316.2 236 67.4
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.7e-84 315.8 242 67.8
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 3.5e-84 315.5 232 70.7
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.5e-84 315.5 216 71.3
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 3.5e-84 315.5 218 71.6
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 4.6e-84 315.1 247 66.4
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 4.6e-84 315.1 235 66.8
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 6.1e-84 314.7 242 67.4
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 6.1e-84 314.7 236 64.8
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 7.9e-84 314.3 237 67.5
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 1.0e-83 313.9 242 67.8
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 1.3e-83 313.5 186 83.3
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 1.3e-83 313.5 218 69.7
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.3e-83 313.5 239 66.9
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 1.8e-83 313.2 237 67.5
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.3e-83 312.8 242 66.9
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 8.7e-83 310.8 242 66.5
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.5e-82 310.1 241 66.4
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.5e-82 309.3 218 70.2
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 7.4e-82 307.8 217 70.5
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.6e-81 306.6 222 66.2
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 2.8e-81 305.8 235 68.1
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 2.8e-81 305.8 196 74.0
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.7e-81 305.4 262 62.6
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 6.3e-81 304.7 260 63.1
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 8.2e-81 304.3 197 71.1
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.1e-80 303.9 186 75.8
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.4e-80 303.5 236 63.6
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.4e-80 303.5 225 65.3
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.4e-80 303.5 197 70.6
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.4e-80 302.8 215 67.4
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 4.1e-80 302.0 236 64.0
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 5.3e-80 301.6 221 67.9
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 6.9e-80 301.2 251 62.9
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.4e-79 298.9 223 65.9
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 2.9e-78 295.8 248 62.5
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.9e-78 295.8 244 62.3
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 5.0e-78 295.0 233 67.8
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 8.5e-78 294.3 249 59.8
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 1.4e-77 293.5 237 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 4.2e-77 292.0 212 65.6
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.2e-76 290.4 235 63.8
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.6e-76 288.9 197 69.5
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 5.1e-75 285.0 231 64.1
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 8.2e-73 277.7 219 63.9
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 2.4e-72 276.2 186 66.7
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 4.1e-72 275.4 240 61.2
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 1.2e-71 273.9 233 59.2
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 5.0e-70 268.5 160 78.1
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.4e-69 266.9 163 76.7
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 7.2e-69 264.6 308 51.3
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 9.4e-69 264.2 198 66.2
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.2e-68 263.8 184 61.4
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 3.7e-65 252.3 188 67.0
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 5.3e-64 248.4 237 51.9
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 6.1e-60 235.0 332 42.8
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 3.0e-59 232.6 183 59.0
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 2.9e-54 216.1 133 73.7
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 5.0e-54 215.3 198 53.5
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 5.0e-46 188.7 129 65.1
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 3.7e-41 172.6 104 75.0
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 2.4e-40 169.9 104 76.9
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.0e-35 152.5 126 65.9
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 6.4e-25 118.6 88 64.8
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 8.6e-22 108.2 166 40.4
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 7.3e-21 105.1 186 26.3
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 3.1e-19 99.8 228 30.7
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 5.2e-19 99.0 188 28.2
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 6.8e-19 98.6 238 25.6
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 2.0e-18 97.1 184 24.5
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.4e-18 95.9 63 71.4
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 9.8e-18 94.7 180 25.0
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 9.8e-18 94.7 182 26.9
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.3e-17 94.4 183 27.9
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 2.9e-17 93.2 164 28.7
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.9e-17 93.2 248 26.2
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.9e-17 93.2 241 25.3
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 4.9e-17 92.4 183 27.3
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.9e-16 90.5 241 24.9
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 9.2e-16 88.2 186 27.4
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.7e-15 86.7 182 24.7
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.5e-15 86.3 185 25.9
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 3.5e-15 86.3 186 25.8
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 4.6e-15 85.9 185 25.9
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.3e-14 84.3 183 25.7
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.7e-14 84.0 215 25.1
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 3.0e-14 83.2 233 24.9
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.0e-14 83.2 186 25.3
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 3.9e-14 82.8 183 25.1
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 3.9e-14 82.8 183 25.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 3.9e-14 82.8 183 25.1
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 3.9e-14 82.8 186 26.3
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 5.1e-14 82.4 186 26.3
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 8.6e-14 81.6 183 26.8
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.1e-13 81.3 233 24.9
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.1e-13 81.3 187 26.2
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.5e-13 80.9 225 25.8
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 1.9e-13 80.5 181 24.9
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 1.9e-13 80.5 181 24.9
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 3.3e-13 79.7 184 24.5
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.8e-12 76.6 243 23.9
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 3.1e-11 73.2 182 24.7
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 4.0e-11 72.8 165 26.1
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.2e-10 71.2 250 25.2
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.2e-10 71.2 41 78.0
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.7e-09 66.2 40 77.5
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.1e-08 64.7 131 25.2
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.2e-07 61.2 248 23.8


User provided reference genes

Program Settings