Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 5.1e-215 750.7 367 100.0
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 3.4e-211 738.0 367 98.1
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 2.9e-210 734.9 367 97.5
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.7e-205 719.2 371 94.1
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 2.2e-205 718.8 371 94.6
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 4.1e-204 714.5 368 95.1
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 9.1e-204 713.4 368 94.8
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.6e-203 712.6 368 94.8
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 2.6e-198 695.3 371 90.6
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 2.6e-198 695.3 399 87.2
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.4e-198 694.5 371 90.3
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.4e-198 694.5 371 90.3
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.3e-197 693.0 359 93.9
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 2.4e-196 688.7 360 92.8
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 2.4e-196 688.7 360 92.8
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 2.4e-196 688.7 360 92.8
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 2.4e-196 688.7 360 92.8
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 2.4e-196 688.7 360 92.8
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.1e-196 688.0 371 88.7
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.1e-193 679.9 369 89.2
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 2.3e-191 672.2 371 87.3
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.8e-191 670.6 371 87.6
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.3e-189 666.4 371 86.8
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.8e-189 665.2 371 87.1
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 3.7e-189 664.8 371 86.3
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 8.3e-189 663.7 371 86.8
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 4.5e-187 657.9 378 85.4
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 7.7e-187 657.1 371 86.3
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.0e-186 656.8 371 85.7
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.0e-186 656.8 371 85.7
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 2.2e-186 655.6 372 85.8
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 1.1e-185 653.3 371 84.9
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 1.9e-185 652.5 371 85.2
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 7.2e-185 650.6 371 85.2
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 3.6e-184 648.3 371 84.4
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 4.7e-184 647.9 372 85.2
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 2.3e-183 645.6 371 84.4
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 3.0e-183 645.2 371 84.4
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 8.8e-183 643.7 371 83.8
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.2e-182 643.3 372 83.9
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.2e-182 643.3 371 84.1
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.5e-182 642.9 371 84.1
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.5e-182 642.9 371 84.1
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.5e-182 642.9 371 84.1
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.6e-182 642.1 371 84.4
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 3.4e-182 641.7 371 83.3
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 7.5e-182 640.6 368 84.2
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 7.5e-182 640.6 372 83.3
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 1.3e-181 639.8 384 81.8
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.7e-181 639.4 372 83.6
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.7e-181 639.4 371 83.6
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 2.8e-181 638.6 371 81.9
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 8.3e-181 637.1 371 83.3
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.8e-180 636.0 410 77.6
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.4e-180 635.6 366 83.6
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.4e-180 635.6 371 83.6
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 3.1e-180 635.2 368 84.0
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 3.1e-180 635.2 371 82.7
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 9.2e-180 633.6 372 83.3
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 9.2e-180 633.6 371 82.7
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 2.7e-179 632.1 371 83.3
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 4.5e-179 631.3 366 83.1
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 7.7e-179 630.6 371 83.0
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 7.7e-179 630.6 364 83.5
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.3e-178 629.8 370 82.4
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 2.9e-178 628.6 366 82.0
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 6.6e-178 627.5 362 84.8
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 6.6e-178 627.5 373 81.5
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.5e-177 625.5 370 81.9
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 3.3e-177 625.2 373 81.2
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 4.3e-177 624.8 372 82.5
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 4.3e-177 624.8 372 82.0
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.3e-177 624.8 373 81.2
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 3.6e-176 621.7 373 81.8
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 6.1e-176 620.9 371 82.2
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 6.1e-176 620.9 371 80.6
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 8.0e-176 620.5 373 81.5
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.3e-175 619.0 371 81.4
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 6.8e-175 617.5 371 80.9
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 8.9e-175 617.1 373 81.8
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 3.4e-174 615.1 373 81.5
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 7.5e-174 614.0 371 79.5
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.7e-173 612.8 371 80.3
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 2.2e-173 612.5 357 83.2
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.2e-173 612.5 360 82.5
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 3.7e-173 611.7 372 77.7
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 4.9e-173 611.3 368 81.2
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 6.4e-173 610.9 368 80.4
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.8e-172 609.4 369 78.6
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 5.4e-172 607.8 371 79.2
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 7.0e-172 607.4 359 82.5
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.0e-172 607.4 398 75.9
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 2.0e-171 605.9 371 80.1
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.7e-171 605.5 384 78.1
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 5.9e-171 604.4 373 79.1
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 7.8e-171 604.0 373 79.9
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.0e-170 603.6 371 77.9
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.3e-170 602.4 371 79.8
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.1e-169 600.1 372 79.3
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 7.3e-169 597.4 351 82.6
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.2e-168 596.7 369 78.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.8e-168 595.5 373 78.6
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.4e-167 593.2 368 78.3
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.3e-167 592.4 375 77.3
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 4.0e-167 591.7 373 76.7
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 5.2e-167 591.3 371 75.2
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 6.4e-165 584.3 368 76.4
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 8.3e-165 583.9 352 81.2
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 4.6e-163 578.2 368 76.1
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 2.3e-162 575.9 370 75.9
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.3e-162 575.9 359 78.3
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 5.0e-162 574.7 371 75.2
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 5.0e-162 574.7 371 75.2
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.5e-161 572.4 371 77.6
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.2e-160 570.1 367 76.8
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 2.1e-160 569.3 352 78.4
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 1.8e-159 566.2 365 75.6
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.3e-159 565.8 434 67.3
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 6.8e-159 564.3 360 76.9
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 6.8e-159 564.3 367 76.6
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 6.8e-159 564.3 373 75.9
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 3.4e-158 562.0 366 77.0
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 9.8e-158 560.5 368 74.2
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.9e-157 558.9 367 73.8
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 2.9e-157 558.9 370 74.1
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.7e-157 558.5 352 79.3
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 6.4e-157 557.8 370 74.1
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.4e-156 555.8 369 71.5
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 9.2e-156 553.9 350 76.6
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 9.2e-156 553.9 367 73.6
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.2e-155 553.5 369 71.5
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.7e-154 549.7 273 98.2
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 6.6e-154 547.7 370 73.0
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.1e-153 547.0 367 72.8
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.5e-153 546.6 367 71.4
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 4.4e-150 535.0 360 71.9
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 4.9e-149 531.6 373 71.8
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.1e-148 530.4 371 67.1
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 4.1e-148 528.5 397 69.3
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 8.6e-146 520.8 371 66.6
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 6.2e-144 514.6 371 65.5
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 6.2e-144 514.6 372 66.7
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.4e-143 512.7 370 65.7
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 2.0e-142 509.6 362 68.2
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.7e-141 506.5 374 66.0
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 2.3e-138 496.1 360 65.0
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 2.1e-136 489.6 368 64.4
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 5.3e-135 485.0 352 67.9
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 6.4e-133 478.0 361 66.5
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.2e-131 473.8 284 80.3
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 7.9e-131 471.1 281 82.9
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.0e-130 470.7 326 71.8
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 6.7e-130 468.0 280 81.8
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.5e-129 466.1 343 70.8
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 4.3e-129 465.3 291 78.7
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 5.3e-127 458.4 279 78.9
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.9e-124 449.9 387 57.4
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 3.5e-123 445.7 329 68.4
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 7.4e-121 438.0 278 78.4
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.4e-118 429.1 364 55.8
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 3.8e-117 425.6 271 77.5
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.2e-115 420.6 369 55.3
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.3e-114 417.2 390 53.6
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.8e-114 416.8 240 85.0
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 2.8e-112 409.5 284 69.4
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 2.9e-109 399.4 275 69.5
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.9e-90 335.9 198 81.8
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.0e-89 333.6 270 64.8
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.7e-88 329.3 223 74.4
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.8e-85 319.3 178 86.0
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 5.7e-81 305.4 168 90.5
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.2e-80 303.5 197 73.6
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.5e-57 227.6 261 52.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 4.9e-48 196.1 359 32.6
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 1.6e-46 191.0 437 28.8
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 2.3e-45 187.2 393 27.5
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 2.8e-43 180.3 114 80.7
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.7e-37 161.0 119 65.5
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.9e-36 157.5 145 55.9
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 4.3e-36 156.4 119 63.9
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 3.4e-33 146.7 293 30.4
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 1.1e-31 141.7 84 76.2
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 5.4e-31 139.4 113 60.2
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 4.5e-09 66.6 68 52.9
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 5.8e-09 66.2 49 69.4


User provided reference genes

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