Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 1.3e-114 416.4 215 100.0
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.1e-87 327.0 222 76.1
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.2e-86 323.6 222 75.2
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.2e-86 323.6 226 76.5
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.9e-84 316.2 225 74.7
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.4e-82 310.1 228 75.0
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 4.8e-80 301.6 229 71.6
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 1.7e-77 293.1 229 70.7
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 6.8e-74 281.2 225 68.4
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 6.8e-74 281.2 225 68.4
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 6.8e-74 281.2 225 68.4
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 6.3e-72 274.6 225 66.2
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 1.1e-71 273.9 248 66.1
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 1.1e-71 273.9 248 66.1
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 1.1e-71 273.9 248 66.1
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 1.1e-68 263.8 232 65.1
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 4.7e-67 258.5 237 62.0
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 2.3e-66 256.1 225 63.1
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 1.4e-63 246.9 221 63.8
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 1.2e-62 243.8 224 61.2
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 3.7e-56 222.2 225 61.8
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 3.7e-56 222.2 225 61.8
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 3.2e-55 219.2 223 63.2
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.1e-47 194.1 230 53.5
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.4e-47 193.0 232 52.2
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 6.8e-42 174.9 227 50.7
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.3e-36 156.0 228 43.9
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 2.1e-35 153.3 231 48.1
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 1.8e-34 150.2 229 46.3
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 1.8e-34 150.2 229 46.3
BcaB02g07151 Brassica carinata HOM05D002704 ORTHO05D002891 3.1e-34 149.4 169 55.0
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 8.9e-34 147.9 228 43.9
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 9.9e-33 144.4 219 45.2
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 2.4e-31 139.8 137 57.7
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 2.4e-31 139.8 137 57.7
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 2.1e-30 136.7 226 41.6
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 2.7e-30 136.3 228 42.5
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 2.7e-30 136.3 228 42.5
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 2.7e-30 136.3 228 42.5
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 6.0e-30 135.2 228 42.1
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 1.7e-29 133.7 227 40.5
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.5e-28 130.6 210 42.9
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 5.6e-28 128.6 217 42.4
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 4.7e-27 125.6 214 41.1
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.1e-26 124.4 212 41.5
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 1.8e-26 123.6 209 45.0
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.8e-26 123.6 237 39.2
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 3.1e-26 122.9 224 41.1
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.1e-26 122.9 147 50.3
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 4.0e-26 122.5 211 41.7
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 6.9e-26 121.7 216 40.7
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 8.9e-26 121.3 212 40.6
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.2e-25 120.9 212 40.1
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 3.4e-25 119.4 224 41.1
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 4.4e-25 119.0 200 45.5
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 7.6e-25 118.2 215 42.3
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 2.2e-24 116.7 214 40.2
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 8.4e-24 114.8 215 40.5
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 1.1e-23 114.4 195 40.0
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 1.4e-23 114.0 211 39.3
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.9e-23 113.6 217 36.9
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 3.2e-23 112.8 223 37.2
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 5.4e-23 112.1 216 38.0
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 7.1e-23 111.7 205 38.5
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 7.1e-23 111.7 220 40.0
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 4.6e-22 109.0 198 36.9
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.0e-21 107.8 205 39.0
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.3e-21 107.5 223 39.5
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.0e-21 106.3 202 38.1
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.5e-20 104.0 212 36.3
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 3.3e-20 102.8 211 36.5
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 4.3e-20 102.4 210 40.0
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 5.6e-20 102.1 200 39.0
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 9.6e-20 101.3 235 36.6
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 9.6e-20 101.3 210 36.2
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.3e-19 100.9 209 37.3
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 1.6e-19 100.5 212 38.7
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 2.1e-19 100.1 209 38.8
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 2.1e-19 100.1 213 38.0
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 4.8e-19 99.0 194 37.1
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 6.2e-19 98.6 236 38.6
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 8.1e-19 98.2 208 37.0
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 1.1e-18 97.8 188 37.8
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.1e-18 97.8 207 37.7
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.8e-18 97.1 228 35.1
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.8e-18 97.1 226 35.8
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.4e-18 96.7 212 36.3
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 3.1e-18 96.3 212 36.8
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.2e-17 94.4 231 37.2
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.5e-17 94.0 199 36.2
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 2.6e-17 93.2 231 36.8
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.4e-17 92.8 231 36.8
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 4.5e-17 92.4 217 35.0
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 5.8e-17 92.0 202 37.6
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 7.6e-17 91.7 231 36.4
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 1.7e-16 90.5 198 34.8
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 1.7e-16 90.5 208 38.5
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.2e-16 90.1 167 36.5
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 2.9e-16 89.7 217 38.2
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 3.8e-16 89.4 222 33.8
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 4.9e-16 89.0 209 36.8
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 6.4e-16 88.6 201 33.3
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 6.4e-16 88.6 177 37.3
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 6.4e-16 88.6 223 33.2
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.4e-16 88.2 219 34.2
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 8.4e-16 88.2 197 34.5
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.1e-15 87.8 231 36.4
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 1.9e-15 87.0 206 35.0
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.9e-15 87.0 215 35.3
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 1.9e-15 87.0 201 34.3
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 4.2e-15 85.9 219 34.7
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 4.2e-15 85.9 228 36.0
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 4.2e-15 85.9 198 34.3
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 5.4e-15 85.5 163 35.0
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 5.4e-15 85.5 207 33.3
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 5.4e-15 85.5 168 37.5
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 7.1e-15 85.1 185 36.2
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 1.2e-14 84.3 205 32.7
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.2e-14 84.3 215 34.4
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.6e-14 84.0 179 34.6
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.6e-14 84.0 201 33.3
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 2.1e-14 83.6 215 34.4
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.1e-14 83.6 171 35.7
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 2.7e-14 83.2 63 60.3
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.7e-14 83.2 178 34.8
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.7e-14 83.2 212 34.4
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 2.7e-14 83.2 217 33.2
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 2.7e-14 83.2 191 33.5
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 2.7e-14 83.2 207 31.4
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 3.5e-14 82.8 213 31.9
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 3.5e-14 82.8 184 35.3
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 6.0e-14 82.0 190 33.7
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 7.9e-14 81.6 192 32.8
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 7.9e-14 81.6 167 35.3
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 1.0e-13 81.3 199 32.7
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 1.0e-13 81.3 211 33.2
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.3e-13 80.9 209 31.6
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.3e-13 80.9 202 32.7
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 1.8e-13 80.5 207 32.9
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 2.3e-13 80.1 208 35.1
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 3.9e-13 79.3 220 35.5
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 5.1e-13 79.0 179 34.1
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 5.1e-13 79.0 207 31.9
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 6.7e-13 78.6 205 33.7
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.1e-12 77.8 123 42.3
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.5e-12 77.4 156 36.5
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 1.5e-12 77.4 227 30.8
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 1.9e-12 77.0 171 33.3
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 1.9e-12 77.0 195 32.8
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 1.9e-12 77.0 213 33.3
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.5e-12 76.6 162 33.3
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 2.5e-12 76.6 183 35.0
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 3.3e-12 76.3 61 57.4
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 4.3e-12 75.9 170 35.9
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 4.3e-12 75.9 203 32.0
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.6e-12 75.5 231 32.0
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 5.6e-12 75.5 183 36.6
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 7.4e-12 75.1 192 31.8
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 9.6e-12 74.7 198 34.8
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.1e-11 73.6 100 42.0
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 2.8e-11 73.2 127 40.2
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 4.8e-11 72.4 190 32.6
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 1.1e-10 71.2 90 42.2
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.4e-10 70.9 127 37.8
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 3.1e-10 69.7 222 31.1
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 3.1e-10 69.7 181 31.5
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 4.0e-10 69.3 200 30.5
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 4.0e-10 69.3 61 54.1
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 6.9e-10 68.6 102 44.1
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.6e-09 66.6 204 30.4
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 2.6e-09 66.6 213 34.7
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.5e-09 65.9 196 31.6
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 4.5e-09 65.9 42 69.0
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 5.8e-09 65.5 144 33.3
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.3e-08 64.3 193 31.6
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.3e-08 64.3 163 37.4
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.2e-08 63.5 46 63.0
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 2.9e-08 63.2 161 34.2
ECA232G3648 Erigeron canadensis HOM05D002704 ORTHO05D000131 4.9e-08 62.4 193 31.1
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 8.4e-08 61.6 51 51.0
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.4e-07 60.1 54 44.4
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.4e-07 60.1 54 44.4
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 9.3e-07 58.2 39 56.4
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.7e-06 56.6 62 43.5


User provided reference genes

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