Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 2687.5 1395 100.0
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 2456.0 1403 90.4
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 2445.6 1402 90.0
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 2422.1 1399 89.4
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 2372.4 1395 87.9
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 2356.6 1403 87.2
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2265.3 1399 85.1
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 2262.3 1399 84.9
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 2259.6 1413 84.4
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2250.7 1400 84.7
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 2186.0 1416 81.6
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1981.8 1411 74.8
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1570.8 1443 59.5
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1563.1 1423 60.3
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1554.7 1425 59.3
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1538.9 1429 57.8
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1526.1 1432 59.1
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1525.4 1442 59.0
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1525.0 1424 57.7
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1523.5 1445 58.0
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1513.0 1380 59.4
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1508.0 1419 58.7
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1505.3 1506 56.6
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1481.5 1424 57.8
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1476.1 1431 56.8
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1474.9 1445 56.7
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1474.1 1436 56.4
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1474.1 1506 54.3
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1471.8 1429 56.8
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1469.5 1379 57.6
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1468.0 1350 59.3
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1467.6 1416 56.4
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1463.0 1367 57.8
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1463.0 1367 57.8
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1463.0 1363 57.7
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1461.4 1358 57.7
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1460.3 1379 57.2
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1459.5 1423 56.8
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1459.1 1493 55.4
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1457.6 1428 56.7
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1454.9 1497 55.4
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1453.7 1495 55.3
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1453.7 1426 56.8
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1452.6 1494 55.6
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1452.2 1441 56.6
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1448.7 1426 56.9
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1443.3 1289 58.9
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1442.6 1418 55.7
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1441.4 1416 55.9
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1439.1 1553 52.9
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1432.2 1434 55.0
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1423.7 1413 54.9
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1422.5 1419 55.6
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1420.6 1412 55.1
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1413.3 1495 54.4
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1401.0 1439 55.9
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1375.1 1387 56.0
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1374.4 1307 56.7
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1367.1 1321 56.2
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1357.8 1326 54.5
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1357.8 1295 56.3
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1355.5 1303 55.6
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1355.5 1295 56.1
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1354.3 1467 53.0
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1352.0 1357 55.2
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1343.9 1356 53.1
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1342.0 1239 57.0
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1339.7 1272 55.3
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1339.3 1410 55.2
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1338.9 1266 55.4
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1337.0 1443 51.2
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1325.8 1297 54.4
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1325.5 1020 64.2
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1323.9 1408 51.1
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1321.2 1231 56.0
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1295.8 1322 52.3
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1265.0 1308 53.1
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1261.1 1212 55.5
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1259.2 1411 50.7
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1255.7 1280 52.0
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1238.8 1245 55.3
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1232.2 1030 59.3
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1225.3 1291 52.6
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1204.5 1276 53.5
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1175.6 1274 50.5
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1152.9 1388 46.5
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1129.4 1257 51.5
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1110.9 1135 57.2
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1102.0 851 62.0
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1092.8 859 63.3
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1078.2 768 68.2
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1077.0 1398 47.0
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 3.6e-301 1038.9 768 66.4
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 2.0e-296 1023.1 863 60.3
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 7.5e-291 1004.6 1031 51.3
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.3e-290 1003.8 1044 52.6
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.6e-285 985.7 1031 51.1
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 5.8e-251 872.1 1011 48.7
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 2.1e-248 863.6 845 55.5
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 7.9e-216 755.4 949 50.7
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 2.4e-212 743.8 819 47.9
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 5.5e-209 732.6 481 72.8
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.8e-189 667.2 799 53.1
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.5e-177 628.2 811 43.9
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.5e-169 600.9 490 62.9
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 8.3e-165 585.9 775 51.2
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 2.0e-163 581.3 775 51.1
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 5.6e-145 520.0 498 52.2
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.3e-136 492.3 324 70.7
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 1.6e-128 465.3 371 60.4
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 2.5e-116 424.9 497 51.7
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.8e-103 382.1 327 56.6
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.5e-97 362.5 235 74.5
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.2e-88 332.0 294 55.4
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.5e-81 309.3 206 71.8
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 4.0e-74 284.6 993 26.0
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.6e-70 272.7 228 61.0
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 6.6e-69 267.3 514 38.3
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 9.5e-68 263.5 208 59.1
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 9.5e-68 263.5 607 39.0
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.5e-65 253.8 173 65.9
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.6e-62 246.1 729 27.2
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.2e-59 236.5 756 26.2
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 7.8e-54 217.2 145 67.6
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 6.2e-51 207.6 154 68.2
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.7e-45 189.5 175 60.0
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.5e-44 186.4 139 64.7
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 4.4e-41 174.9 104 81.7
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 9.9e-41 173.7 115 70.4
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 6.4e-40 171.0 423 38.1
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 3.2e-39 168.7 470 34.3
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 2.8e-35 155.6 139 53.2
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 3.1e-34 152.1 231 39.0
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 1.7e-32 146.4 126 52.4
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 7.1e-31 141.0 157 51.6
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 9.2e-31 140.6 687 23.0
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 6.9e-26 124.4 85 68.2
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 9.0e-26 124.0 105 57.1
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 2.9e-24 119.0 72 68.1
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 2.9e-24 119.0 111 53.2
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 6.4e-24 117.9 122 54.1
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.1e-23 117.1 117 50.4
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 2.7e-22 112.5 121 52.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 1.7e-21 109.8 81 63.0
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.9e-20 106.3 79 67.1
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 1.3e-19 103.6 75 65.3
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.6e-19 103.2 119 49.6
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 4.8e-19 101.7 154 42.2
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 6.9e-18 97.8 69 65.2
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 9.0e-18 97.4 138 42.0
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 1.2e-17 97.1 162 45.7
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 2.6e-17 95.9 119 44.5
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 1.3e-16 93.6 62 71.0
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 2.4e-15 89.4 157 43.3
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 1.3e-13 83.6 69 60.9
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 2.8e-11 75.9 54 53.7
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.4e-10 73.6 66 56.1
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 1.8e-10 73.2 87 44.8
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 2.6e-09 69.3 48 75.0
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 3.4e-09 68.9 87 49.4
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 7.6e-09 67.8 141 38.3
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 7.6e-09 67.8 104 39.4
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 7.6e-09 67.8 36 77.8
Thhalv10002734m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 5.5e-07 61.6 43 72.1
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 2.7e-06 59.3 73 37.0
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 4.6e-06 58.5 353 20.4
Pp3c19_6990 Physcomitrium patens HOM05D002132 ORTHO05D002168 7.9e-06 57.8 352 20.7


User provided reference genes

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