Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 6.0e-297 1023.5 532 100.0
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 3.6e-270 934.5 532 90.0
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.3e-267 926.0 532 89.8
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.3e-264 915.2 532 88.7
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 3.9e-264 914.4 532 88.0
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 3.3e-255 884.8 532 85.2
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.4e-245 852.8 532 81.8
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 6.1e-233 810.8 534 80.3
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 2.3e-232 808.9 534 80.0
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 6.9e-229 797.3 534 79.2
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 3.0e-224 781.9 532 77.1
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.5e-218 763.1 534 76.8
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 4.7e-209 731.5 535 71.2
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.2e-198 696.0 529 67.7
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 6.3e-198 694.5 531 67.0
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 6.3e-198 694.5 529 67.5
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 7.0e-197 691.0 534 66.3
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.6e-196 689.9 531 65.7
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 2.0e-196 689.5 537 66.7
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 2.9e-195 685.6 535 64.9
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 3.3e-194 682.2 537 66.9
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.6e-193 678.7 538 66.0
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 6.1e-193 677.9 535 64.9
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.0e-192 677.2 533 66.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 2.3e-192 676.0 535 64.7
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 5.2e-192 674.9 538 64.1
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 6.8e-192 674.5 538 64.3
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.7e-190 669.8 523 64.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 2.8e-190 669.1 541 62.8
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 3.7e-190 668.7 540 62.8
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 4.9e-190 668.3 538 64.7
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 6.3e-190 667.9 528 64.6
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.4e-189 666.8 533 63.4
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 1.8e-189 666.4 535 63.7
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.4e-189 666.0 539 62.7
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.2e-189 665.6 535 63.7
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 5.4e-189 664.8 522 64.6
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.7e-188 662.5 540 63.0
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 7.8e-188 661.0 529 63.1
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.0e-187 658.3 524 63.4
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.3e-186 655.6 532 62.0
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 4.3e-186 655.2 528 64.0
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 5.6e-186 654.8 527 63.4
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 5.6e-186 654.8 531 63.3
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 3.6e-185 652.1 558 60.4
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.0e-184 648.7 543 62.4
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.5e-183 646.7 534 59.6
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 2.0e-183 646.4 531 63.1
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 5.8e-183 644.8 530 61.9
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 9.8e-183 644.0 535 62.2
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.3e-182 643.7 521 63.5
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.9e-182 642.5 534 59.7
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 3.7e-182 642.1 532 61.8
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 4.9e-182 641.7 533 61.2
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 6.4e-182 641.3 530 61.7
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 8.3e-182 641.0 554 61.0
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 1.4e-181 640.2 524 62.8
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.4e-181 640.2 523 64.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 4.1e-181 638.6 530 62.8
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 7.0e-181 637.9 538 61.2
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 4.6e-180 635.2 523 62.0
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 2.3e-179 632.9 529 63.3
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 5.0e-179 631.7 579 58.5
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 5.0e-179 631.7 534 61.2
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 6.2e-177 624.8 547 60.3
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 1.8e-176 623.2 585 56.2
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 8.9e-176 620.9 531 61.0
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.2e-175 620.5 535 60.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.6e-175 619.4 521 61.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 5.8e-175 618.2 534 59.7
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 3.7e-174 615.5 538 59.5
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 3.7e-174 615.5 520 61.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 4.3e-170 602.1 533 60.8
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 8.9e-168 594.3 553 57.7
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.5e-167 593.6 531 58.0
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 7.6e-167 591.3 500 62.0
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.9e-166 589.3 587 55.5
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 4.1e-165 585.5 547 58.0
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 4.6e-164 582.0 529 56.1
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 2.5e-162 576.2 450 65.1
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.8e-160 570.1 441 66.4
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 2.0e-159 566.6 539 56.8
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 6.4e-158 561.6 545 56.3
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 9.3e-157 557.8 499 57.9
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.3e-154 549.3 526 54.0
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.9e-150 536.2 526 52.9
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.3e-147 527.3 532 53.6
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.4e-144 517.3 437 59.3
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.9e-141 506.9 531 52.2
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.5e-130 469.9 413 59.8
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 8.2e-129 464.9 573 48.7
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 5.0e-126 455.7 397 58.7
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.4e-125 454.1 391 61.4
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 4.8e-121 439.1 546 45.1
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.8e-120 437.2 544 44.3
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 3.1e-120 436.4 532 44.9
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 5.3e-104 382.5 355 56.3
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 7.0e-104 382.1 502 45.8
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 2.0e-103 380.6 355 56.1
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.7e-100 370.2 559 38.8
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.7e-97 360.9 289 64.4
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.0e-94 351.7 548 38.9
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 6.8e-91 339.0 287 61.0
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.6e-87 327.8 467 40.9
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 9.5e-77 292.0 312 52.9
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 7.8e-71 272.3 386 42.0
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 4.3e-69 266.5 556 32.9
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.7e-68 263.1 204 65.2
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 6.8e-67 259.2 574 33.1
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.1e-55 221.1 212 56.1
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 2.3e-51 207.6 543 30.0
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.3e-51 207.6 151 68.9
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.9e-49 199.9 156 66.0
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 8.9e-43 179.1 169 50.9
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 1.1e-40 172.2 135 63.0
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.2e-40 170.2 130 63.1
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 2.1e-39 167.9 108 82.4
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 4.6e-39 166.8 135 65.2
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 9.6e-37 159.1 126 58.7
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.6e-29 133.3 113 59.3
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.9e-27 126.3 91 68.1
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 1.7e-25 121.7 85 69.4
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 4.6e-23 113.6 100 64.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.0e-22 112.5 432 26.6
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 2.3e-22 111.3 71 80.3
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 4.3e-21 107.1 87 66.7
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 4.3e-21 107.1 87 66.7
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 3.8e-17 94.0 94 50.0
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 1.9e-13 81.6 87 57.5
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.3e-13 80.5 90 47.8
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 4.8e-12 77.0 114 46.5
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.8e-11 75.1 125 40.0
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.9e-09 67.8 73 46.6
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 6.5e-09 66.6 49 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.9e-08 65.1 296 29.4
TWI34G1250 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 7.2e-08 63.2 250 31.2
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 1.8e-06 58.5 66 47.0
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 2.3e-06 58.2 173 28.3
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 6.7e-06 56.6 158 28.5


User provided reference genes

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