Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 0.0e+00 1196.8 604 100.0
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 0.0e+00 1146.7 604 95.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 8.3e-312 1072.8 604 91.2
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.4e-310 1068.1 605 88.9
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 8.8e-305 1049.7 605 88.1
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 2.1e-298 1028.5 604 85.9
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 6.1e-298 1026.9 604 85.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 8.0e-298 1026.5 604 86.1
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.4e-297 1025.8 604 85.8
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.0e-296 1021.9 604 85.3
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 9.8e-296 1019.6 605 85.6
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 7.0e-294 1013.4 605 85.3
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 7.8e-277 956.8 610 80.8
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.6e-258 896.0 614 73.8
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 9.3e-246 853.6 608 70.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.6e-240 835.5 622 66.4
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 4.5e-240 834.7 613 68.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.9e-238 829.3 615 67.2
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 2.4e-238 828.9 612 67.5
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 3.2e-238 828.6 615 67.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 4.2e-238 828.2 613 67.7
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 4.6e-237 824.7 613 66.6
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 6.0e-237 824.3 615 67.0
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 7.9e-237 823.9 624 66.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 7.9e-237 823.9 615 67.6
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.0e-236 823.5 611 67.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.3e-236 823.2 620 66.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.3e-236 822.4 615 66.8
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.0e-236 822.0 616 67.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 6.7e-236 820.8 613 66.6
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 7.4e-235 817.4 615 67.2
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.3e-234 816.6 613 67.5
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.3e-234 816.6 613 67.5
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.4e-233 813.1 616 66.7
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.8e-233 812.8 615 66.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 5.3e-233 811.2 614 66.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 9.0e-233 810.4 613 65.6
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.5e-232 809.7 616 65.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.5e-232 809.7 614 65.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 9.9e-232 807.0 615 66.0
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.3e-231 806.6 609 66.5
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.7e-231 806.2 615 65.9
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.9e-231 805.4 615 65.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.4e-230 803.1 610 67.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.9e-230 802.7 618 64.6
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.4e-230 802.4 614 66.0
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.2e-229 800.0 613 65.3
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 2.1e-229 799.3 619 64.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.7e-229 798.9 621 65.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.3e-228 796.6 613 65.1
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.1e-227 793.5 613 64.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.1e-227 793.5 626 64.4
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.5e-227 793.1 602 65.0
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.9e-227 792.7 689 59.1
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.3e-227 792.0 621 64.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.3e-226 790.0 618 62.8
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.8e-226 788.9 613 64.4
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 6.2e-226 787.7 621 65.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.2e-226 787.3 613 64.6
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.4e-225 786.6 617 64.8
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.1e-225 785.4 617 65.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 4.5e-224 781.6 614 62.7
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.0e-223 780.4 612 64.1
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.7e-223 779.6 612 64.5
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.2e-223 779.2 614 64.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 4.9e-223 778.1 562 66.2
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.1e-222 776.9 614 64.0
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.5e-221 771.9 613 63.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 5.1e-220 768.1 571 66.5
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 7.4e-219 764.2 595 64.5
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.8e-218 762.3 609 64.5
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 3.7e-218 761.9 602 64.6
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 5.9e-216 754.6 742 55.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.0e-215 753.8 605 62.1
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.3e-215 753.4 604 63.1
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.9e-214 749.6 606 61.6
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 8.2e-210 734.2 613 60.5
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 2.4e-209 732.6 610 61.6
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.4e-209 732.6 616 59.6
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 3.4e-208 728.8 607 61.3
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 5.9e-208 728.0 567 64.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.7e-207 726.5 574 65.3
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.4e-204 716.8 550 65.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 3.3e-203 712.2 589 61.6
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 8.2e-202 707.6 611 59.2
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.5e-200 703.4 549 62.8
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.0e-191 671.8 611 57.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.2e-186 656.4 620 55.6
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.2e-178 629.8 619 54.1
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 5.4e-177 625.2 501 63.7
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.8e-172 610.1 607 55.4
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.0e-164 582.4 679 46.4
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.3e-162 577.4 527 56.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.3e-159 566.6 685 47.7
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.7e-149 532.3 490 57.6
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 6.4e-146 521.9 513 54.2
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-137 494.6 380 65.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-137 491.9 377 64.7
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-136 491.1 360 66.1
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 5.3e-124 449.1 360 63.1
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 3.9e-119 433.0 433 55.2
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 7.1e-113 412.1 360 61.1
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-107 394.8 375 55.7
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.1e-100 371.7 318 60.1
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.1e-100 370.2 258 69.8
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.5e-99 367.9 258 69.4
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.1e-97 361.7 647 37.1
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.0e-94 350.9 257 67.3
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 2.6e-91 340.5 245 68.2
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.4e-84 317.4 232 66.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 5.5e-81 306.2 627 34.1
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 3.5e-75 287.0 179 74.3
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 7.2e-57 226.1 222 55.9
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-55 221.9 224 55.4
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.5e-46 191.8 178 56.2
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 7.0e-44 183.0 159 58.5
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.0e-42 179.1 112 74.1
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 7.3e-41 172.9 105 78.1
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-40 172.2 112 71.4
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-40 171.4 109 75.2
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 3.6e-40 170.6 111 71.2
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 5.2e-39 166.8 112 69.6
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 9.2e-36 156.0 160 51.9
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.8e-32 144.4 81 86.4
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.8e-32 144.4 81 86.4
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 5.2e-31 140.2 133 57.1
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 5.8e-30 136.7 105 61.9
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 9.9e-30 136.0 100 65.0
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-27 126.7 87 70.1
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.8e-27 126.3 82 74.4
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 1.1e-25 122.5 503 24.9
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 8.1e-24 116.3 72 77.8
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-23 115.9 121 53.7
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-22 112.5 68 73.5
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 4.9e-21 107.1 135 45.9
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-19 100.1 66 71.2
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 6.6e-18 96.7 55 76.4
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.9e-17 95.1 83 53.0
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-12 78.2 55 69.1
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.4e-12 77.0 142 38.7
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 9.3e-12 76.3 41 78.0
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.0e-10 72.8 183 29.0
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.3e-10 72.4 182 28.6
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.7e-10 72.0 182 28.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-10 72.0 40 77.5
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 3.3e-09 67.8 41 73.2
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 9.6e-09 66.2 41 65.9
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.3e-08 65.9 183 25.1
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.3e-08 65.9 47 61.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 3.6e-08 64.3 185 27.6
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 6.2e-08 63.5 203 26.1
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 3.4e-06 57.8 54 55.6


User provided reference genes

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