Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.8e-229 798.9 392 100.0
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.8e-126 455.3 437 59.5
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 5.5e-122 441.8 462 56.3
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.4e-117 426.4 426 57.7
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.7e-89 332.4 446 46.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 7.5e-79 298.5 416 46.2
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 7.5e-79 298.5 416 46.2
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 9.7e-79 298.1 416 46.6
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.0e-75 288.1 416 46.2
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 2.5e-74 283.5 416 44.7
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 4.7e-73 279.3 415 46.3
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 9.5e-66 255.0 426 41.3
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.5e-50 204.5 422 36.3
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 5.6e-50 202.6 423 36.9
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 1.1e-48 198.4 423 34.8
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.0e-47 194.1 421 34.2
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.2e-46 190.7 421 32.3
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.7e-43 181.0 447 33.1
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 5.0e-43 179.5 420 32.9
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.1e-42 178.3 418 33.7
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 9.5e-42 175.3 419 32.9
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.8e-41 173.7 418 33.3
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.6e-39 167.2 464 30.8
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 8.4e-30 135.6 293 36.5
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 3.4e-23 113.6 528 25.0
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.7e-22 111.3 493 26.4
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.1e-21 108.6 494 24.1
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.4e-21 108.2 137 38.0
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.4e-21 108.2 123 43.1
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.9e-21 107.8 494 24.3
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 9.3e-21 105.5 154 36.4
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.6e-20 104.8 105 42.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 2.7e-20 104.0 136 41.2
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.3e-19 100.9 145 38.6
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 3.9e-19 100.1 145 36.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.9e-19 100.1 144 35.4
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 8.7e-19 99.0 145 34.5
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.5e-18 98.2 513 24.0
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 3.3e-18 97.1 108 41.7
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 3.3e-18 97.1 363 28.9
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 7.3e-18 95.9 187 31.6
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 4.8e-17 93.2 136 37.5
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 6.2e-17 92.8 387 25.6
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.4e-16 90.9 583 23.3
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.1e-16 90.5 152 33.6
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 3.1e-16 90.5 152 33.6
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 3.1e-16 90.5 155 32.3
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 4.0e-16 90.1 187 31.6
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 5.3e-16 89.7 154 33.1
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 9.0e-16 89.0 153 32.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.2e-15 88.6 109 37.6
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.5e-15 88.2 167 30.5
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.6e-15 87.4 150 32.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 4.5e-15 86.7 110 39.1
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.8e-15 86.3 449 23.4
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 7.6e-15 85.9 109 40.4
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 9.9e-15 85.5 101 39.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.4e-13 80.9 164 29.3
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 2.4e-13 80.9 178 32.0
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 2.4e-13 80.9 126 34.9
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 5.4e-13 79.7 155 30.3
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 2.7e-12 77.4 128 35.9
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 2.7e-12 77.4 128 35.9
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 7.9e-12 75.9 152 29.6
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.0e-11 75.5 123 35.0
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.3e-11 75.1 114 37.7
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.3e-11 74.3 114 33.3
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 2.3e-11 74.3 122 36.9
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 3.9e-11 73.6 129 34.9
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 3.9e-11 73.6 133 35.3
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 5.1e-11 73.2 118 33.1
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 6.7e-11 72.8 134 33.6
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 6.7e-11 72.8 111 36.9
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 6.7e-11 72.8 111 36.9
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 6.7e-11 72.8 124 31.5
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 6.7e-11 72.8 105 40.0
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.1e-10 72.0 134 33.6
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.1e-10 72.0 117 32.5
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 2.5e-10 70.9 136 30.1
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 2.5e-10 70.9 224 25.9
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 3.3e-10 70.5 140 31.4
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 3.3e-10 70.5 98 34.7
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.3e-10 70.5 73 41.1
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 4.3e-10 70.1 136 30.1
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 4.3e-10 70.1 110 37.3
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 7.4e-10 69.3 105 33.3
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 7.4e-10 69.3 121 30.6
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.3e-09 68.6 86 38.4
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 2.8e-09 67.4 49 53.1
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.7e-09 67.0 92 34.8
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 4.8e-09 66.6 109 33.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 4.8e-09 66.6 109 33.0
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 6.2e-09 66.2 305 25.2
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 2.4e-08 64.3 135 32.6
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.0e-08 63.5 101 30.7
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 9.0e-08 62.4 92 37.0
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 1.2e-07 62.0 58 39.7
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 1.7e-06 58.2 141 27.7
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 6.4e-06 56.2 82 34.1
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 6.4e-06 56.2 102 36.3
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 8.4e-06 55.8 117 32.5


User provided reference genes

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