Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.3e-137 493.0 253 100.0
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.9e-112 409.5 285 76.5
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.8e-105 386.3 282 72.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.5e-104 382.5 282 71.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.4e-102 375.9 301 68.4
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 7.6e-101 370.9 290 69.0
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.7e-100 369.8 289 68.9
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.2e-100 369.4 286 68.5
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 3.8e-100 368.6 292 67.8
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 9.3e-99 364.0 292 66.8
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.6e-98 363.2 298 65.8
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.8e-97 359.8 287 67.9
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.8e-86 323.2 244 70.1
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.1e-83 313.9 280 63.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 2.6e-80 302.8 302 57.0
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.2e-74 283.9 288 54.5
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.5e-69 265.4 284 50.7
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.7e-66 256.1 281 49.5
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.7e-66 255.4 284 48.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 4.0e-65 252.3 286 48.3
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.4e-64 248.8 252 51.2
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.3e-63 245.0 281 46.6
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.1e-62 244.2 289 45.0
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.4e-62 243.8 283 47.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 5.3e-62 241.9 249 51.4
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 7.0e-62 241.5 252 48.0
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 7.0e-62 241.5 281 47.3
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 9.1e-62 241.1 274 47.1
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.6e-61 240.4 270 47.0
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 2.0e-61 240.0 281 46.6
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.5e-61 239.2 282 44.3
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.5e-61 239.2 285 46.7
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 4.5e-61 238.8 282 45.7
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.2e-60 236.5 282 44.7
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.9e-60 236.1 291 45.4
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.9e-60 236.1 286 43.4
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.5e-59 233.8 284 46.5
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 5.5e-59 231.9 249 49.0
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 9.4e-59 231.1 243 49.4
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.2e-58 230.7 283 46.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.7e-58 229.6 283 44.9
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.7e-58 228.8 249 47.8
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.7e-58 228.8 283 43.8
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.0e-58 228.0 249 47.8
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 8.0e-58 228.0 266 48.9
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.0e-57 227.6 251 47.8
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.0e-57 227.6 270 46.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.4e-57 227.3 251 47.4
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.3e-57 226.5 282 42.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.3e-57 226.5 292 44.2
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.3e-57 226.5 282 45.7
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 6.8e-57 224.9 283 43.1
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 6.8e-57 224.9 273 47.6
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.5e-56 223.8 283 43.8
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.0e-56 223.4 251 48.2
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 2.6e-56 223.0 294 42.2
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.6e-56 223.0 267 44.9
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.4e-56 222.6 292 44.2
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 4.4e-56 222.2 249 45.8
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.7e-55 220.3 294 39.5
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.2e-55 219.9 292 41.1
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.8e-55 219.5 256 46.5
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 2.8e-55 219.5 273 45.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.7e-55 219.2 243 47.7
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.8e-55 218.8 242 47.1
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 4.8e-55 218.8 267 46.1
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.1e-54 217.6 251 45.0
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 3.1e-54 216.1 259 43.2
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.1e-54 216.1 249 45.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 7.0e-54 214.9 258 43.8
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 9.1e-54 214.5 277 40.4
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.6e-53 213.8 251 43.4
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 5.9e-53 211.8 249 42.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-51 207.6 260 43.5
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.9e-51 206.8 277 39.4
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.5e-51 205.3 242 43.4
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.2e-51 204.9 242 44.6
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.2e-51 204.9 287 40.1
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 9.5e-51 204.5 267 40.8
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.8e-50 203.0 242 44.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 6.1e-50 201.8 272 43.4
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.0e-49 201.1 272 43.4
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.4e-49 200.7 253 44.7
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 4.0e-49 199.1 233 44.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 8.9e-49 198.0 269 37.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 8.9e-49 198.0 269 37.2
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.2e-48 197.6 267 41.6
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.2e-48 197.6 313 34.5
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.5e-48 197.2 274 40.5
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.5e-48 197.2 285 41.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.0e-48 196.8 280 40.4
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.4e-48 196.1 280 40.4
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.7e-47 193.7 292 40.1
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.2e-47 193.4 233 45.1
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.2e-47 193.4 283 41.3
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.7e-47 192.6 407 31.7
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.9e-47 192.2 254 42.5
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.4e-46 190.7 256 43.0
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 4.1e-46 189.1 287 36.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 7.0e-46 188.3 254 42.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.0e-46 188.3 254 42.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 9.2e-46 188.0 213 48.4
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.0e-45 186.8 286 39.2
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.5e-45 185.7 253 41.5
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.7e-44 183.7 205 45.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.9e-44 183.0 341 34.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.5e-43 179.9 248 42.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 8.0e-42 174.9 249 40.6
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 3.0e-41 172.9 299 34.1
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.7e-39 167.2 135 60.0
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.4e-38 164.1 283 37.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.7e-37 159.8 135 58.5
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.0e-36 155.6 253 37.5
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.5e-35 154.1 209 43.5
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 6.2e-34 148.7 238 39.1
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.2e-33 145.6 118 66.1
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.6e-32 143.3 208 38.9
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.9e-31 139.8 109 60.6
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.7e-31 139.4 210 36.2
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-30 137.5 146 48.6
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.9e-30 137.1 123 56.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.4e-30 135.6 251 34.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.2e-29 134.4 169 51.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 1.4e-25 120.9 133 51.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.0e-25 119.4 86 68.6
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 5.2e-25 119.0 127 57.5
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-24 117.9 140 45.7
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 1.3e-20 104.4 91 67.0
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 1.3e-20 104.4 91 67.0
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.7e-20 104.0 133 47.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 3.0e-20 103.2 131 48.1
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 6.6e-20 102.1 239 32.2
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.9e-19 100.5 152 41.4
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.5e-19 100.1 250 30.4
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 3.3e-19 99.8 211 31.3
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.3e-19 99.4 64 75.0
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.2e-18 97.8 343 24.8
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.6e-18 97.4 255 29.0
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.6e-18 97.4 225 34.2
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.1e-18 97.1 65 70.8
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.1e-17 93.2 238 28.6
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 6.8e-17 92.0 244 27.5
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.0e-16 90.5 117 50.4
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 4.4e-16 89.4 69 60.9
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.8e-15 86.3 166 30.7
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.1e-14 82.8 61 67.2
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.4e-14 82.4 110 39.1
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.1e-14 82.0 178 31.5
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.9e-12 76.3 440 21.4
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.1e-12 75.9 181 30.4
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.1e-11 74.7 103 35.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 5.6e-11 72.4 99 44.4
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-10 70.9 88 43.2
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 4.7e-10 69.3 106 39.6
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 8.1e-10 68.6 127 32.3
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-09 68.2 167 31.7
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.4e-09 67.8 107 37.4
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 2.6e-08 63.5 55 56.4
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 4.4e-08 62.8 222 27.5
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 1.7e-07 60.8 70 45.7
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.1e-06 58.2 144 30.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 5.4e-06 55.8 119 32.8
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 5.4e-06 55.8 38 60.5


User provided reference genes

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