Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 6.2e-227 790.4 389 100.0
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 3.7e-179 631.7 382 80.4
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 1.7e-176 622.9 378 81.2
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 1.1e-172 610.1 389 79.4
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 4.7e-158 561.6 393 72.8
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 4.7e-158 561.6 391 72.6
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 1.2e-156 557.0 387 73.1
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 5.7e-156 554.7 384 73.4
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.7e-155 553.1 384 73.2
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.8e-155 552.4 376 74.2
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.8e-155 552.4 384 73.2
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 9.1e-154 547.4 389 72.5
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 4.7e-134 481.9 382 64.9
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 3.6e-110 402.5 387 55.8
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.3e-78 297.7 378 45.5
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 2.2e-78 297.0 371 44.2
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 2.8e-78 296.6 372 45.7
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.1e-77 294.7 372 43.3
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 3.1e-77 293.1 371 43.4
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 5.3e-77 292.4 366 44.0
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 5.3e-77 292.4 370 44.3
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 2.0e-76 290.4 371 43.1
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.6e-76 290.0 375 42.7
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 2.6e-76 290.0 376 45.2
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 7.7e-76 288.5 374 41.4
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 7.7e-76 288.5 371 44.5
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.0e-75 288.1 374 40.9
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 2.2e-75 287.0 366 44.8
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 8.5e-75 285.0 373 45.0
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.4e-74 284.3 371 42.6
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 9.4e-74 281.6 346 46.0
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 9.4e-74 281.6 374 45.2
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.2e-73 281.2 368 43.2
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.7e-73 280.0 371 41.8
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.6e-73 279.3 372 42.5
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 6.1e-73 278.9 373 42.4
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 7.9e-73 278.5 372 42.5
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.4e-72 277.7 374 44.7
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 2.3e-72 276.9 368 44.8
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 5.1e-72 275.8 370 43.5
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 8.8e-72 275.0 381 40.7
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 1.5e-71 274.2 376 42.6
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.0e-71 273.9 372 42.2
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 5.7e-71 272.3 378 41.5
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 7.4e-71 271.9 376 42.8
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 9.7e-71 271.6 367 39.8
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.3e-70 271.2 374 42.2
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 2.2e-70 270.4 376 42.6
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.8e-70 269.2 375 40.5
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.3e-70 268.9 380 39.5
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.2e-70 268.5 378 39.9
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 8.2e-70 268.5 387 39.5
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.4e-69 267.7 380 41.8
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 2.4e-69 266.9 374 40.1
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 3.1e-69 266.5 367 41.4
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 5.3e-69 265.8 375 40.3
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 5.3e-69 265.8 345 43.8
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 6.9e-69 265.4 375 40.8
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 9.1e-69 265.0 375 42.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.2e-68 264.6 405 41.2
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.5e-68 264.2 376 41.5
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 4.5e-68 262.7 392 40.6
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.7e-67 260.8 380 40.0
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.9e-67 260.0 387 39.8
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 6.5e-67 258.8 371 41.8
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.1e-66 258.1 366 41.8
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 1.1e-66 258.1 402 40.3
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.1e-66 258.1 378 42.9
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.4e-66 257.7 373 41.3
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 1.9e-66 257.3 382 38.7
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 3.2e-66 256.5 379 38.5
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.2e-65 254.6 367 40.6
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 2.1e-65 253.8 381 40.9
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 2.1e-65 253.8 386 39.9
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 2.7e-65 253.4 370 41.1
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.7e-65 253.4 376 41.0
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 3.6e-65 253.1 369 40.4
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 4.7e-65 252.7 370 39.2
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.9e-65 251.9 380 38.9
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 1.4e-64 251.1 341 41.3
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 3.0e-64 250.0 343 41.7
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 3.9e-64 249.6 367 39.5
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 5.1e-64 249.2 377 39.3
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.1e-63 248.1 377 39.5
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 2.0e-63 247.3 381 39.6
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.3e-63 246.5 378 38.4
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.7e-63 245.7 321 45.5
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 7.4e-63 245.4 376 38.0
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.7e-62 244.2 373 40.5
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.8e-62 243.4 379 39.3
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 1.4e-61 241.1 360 40.0
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 7.0e-61 238.8 368 39.4
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 3.5e-60 236.5 375 37.1
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 4.5e-60 236.1 370 37.3
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 4.5e-60 236.1 376 38.8
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.3e-59 234.6 367 36.5
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 3.8e-59 233.0 378 38.6
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 8.5e-59 231.9 367 37.6
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 8.5e-59 231.9 373 38.6
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 3.2e-58 229.9 382 37.7
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 4.2e-58 229.6 369 36.6
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 4.2e-58 229.6 364 37.9
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 5.5e-58 229.2 378 37.8
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 3.6e-57 226.5 373 37.3
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 3.6e-57 226.5 373 37.3
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.7e-57 226.1 366 38.0
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 6.1e-57 225.7 372 37.9
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.8e-56 224.2 337 38.3
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.8e-56 224.2 398 37.7
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 2.0e-55 220.7 382 38.0
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 5.7e-55 219.2 372 36.3
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 8.2e-54 215.3 250 47.6
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.1e-53 213.4 372 36.0
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 7.0e-53 212.2 380 37.9
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 9.1e-53 211.8 268 43.7
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.6e-52 210.3 216 49.5
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 3.8e-51 206.5 271 41.0
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.5e-50 203.8 377 37.4
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 3.2e-50 203.4 275 40.4
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 9.4e-50 201.8 374 32.6
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.1e-49 200.7 263 40.7
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 3.6e-49 199.9 377 32.9
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.3e-48 197.2 294 37.4
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 3.0e-48 196.8 375 37.1
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 5.2e-48 196.1 377 32.9
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 2.8e-46 190.3 367 33.2
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 7.0e-45 185.7 289 39.1
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.2e-44 184.9 178 50.0
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 4.0e-40 169.9 374 31.8
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 3.7e-38 163.3 188 45.2
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 1.8e-37 161.0 219 39.7
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 2.8e-33 147.1 390 29.5
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 3.0e-32 143.7 170 46.5
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.7e-30 136.7 393 29.3
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 6.4e-30 136.0 221 33.9
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 7.0e-29 132.5 379 30.3
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 1.0e-27 128.6 380 31.1
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 1.0e-27 128.6 380 31.1
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 3.9e-27 126.7 380 30.5
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 4.3e-26 123.2 209 38.8
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 9.5e-26 122.1 343 28.6
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.1e-25 120.9 389 28.3
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 2.8e-25 120.6 380 27.1
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 2.8e-25 120.6 382 30.1
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 2.8e-25 120.6 382 30.1
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.7e-25 119.8 390 28.2
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 1.0e-24 118.6 383 31.1
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 3.1e-24 117.1 395 29.9
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 6.8e-24 115.9 379 28.2
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.0e-23 114.4 375 29.6
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 3.4e-23 113.6 373 29.2
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 1.3e-22 111.7 399 30.6
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.7e-22 111.3 361 27.4
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 2.2e-22 110.9 393 28.2
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 8.3e-22 109.0 402 29.6
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 8.3e-22 109.0 396 29.5
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.3e-22 109.0 349 28.7
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 2.4e-21 107.5 403 30.0
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 9.2e-21 105.5 384 27.6
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.6e-20 104.8 240 32.1
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 6.0e-20 102.8 155 38.7
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 1.0e-19 102.1 387 27.4
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.3e-19 101.7 390 27.7
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.3e-19 101.7 390 27.7
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 3.0e-19 100.5 390 27.4
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 8.6e-19 99.0 194 32.0
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.1e-18 98.6 389 26.5
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 4.3e-18 96.7 264 29.5
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 1.6e-17 94.7 381 26.8
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 1.1e-16 92.0 397 27.5
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 3.1e-16 90.5 386 26.7
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 2.6e-15 87.4 118 44.1
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.7e-11 74.7 82 45.1
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 4.3e-10 70.1 81 48.1
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 3.1e-08 63.9 92 42.4
Pp3c10_6350 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.4e-07 60.1 128 29.7


User provided reference genes

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