Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.8e-82 309.3 168 100.0
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.8e-77 292.7 168 93.5
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.1e-77 291.2 168 92.3
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 5.6e-76 287.7 169 92.3
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.2e-73 280.0 168 89.3
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 7.6e-73 277.3 168 88.7
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.7e-72 276.2 168 88.7
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-71 272.7 168 86.9
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-71 272.7 168 86.9
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.9e-71 272.7 168 86.9
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.9e-71 272.7 168 86.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 3.2e-71 271.9 168 86.3
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 3.2e-71 271.9 168 86.3
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 1.2e-70 270.0 168 88.7
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 1.2e-70 270.0 168 88.7
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.0e-69 266.9 168 86.9
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-69 266.5 169 87.0
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-69 266.5 169 87.0
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 1.3e-69 266.5 169 87.0
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 3.9e-69 265.0 168 86.3
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 3.9e-69 265.0 168 86.3
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 8.7e-69 263.8 168 85.7
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.5e-68 263.1 168 85.7
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 3.7e-67 258.5 165 85.5
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 6.3e-67 257.7 168 80.4
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.4e-66 256.5 169 79.9
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 4.2e-63 245.0 171 77.2
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 5.5e-63 244.6 171 78.4
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 7.2e-63 244.2 171 77.2
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.6e-62 243.0 171 76.6
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.6e-62 243.0 171 76.6
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 4.6e-62 241.5 170 75.9
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 6.1e-62 241.1 170 76.5
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 7.9e-62 240.7 169 78.7
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.0e-61 240.4 172 77.9
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.0e-61 238.8 172 75.6
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 5.1e-61 238.0 170 75.9
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.5e-60 235.7 173 74.0
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 3.3e-60 235.3 172 72.7
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 4.3e-60 235.0 168 72.0
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.7e-59 231.9 168 73.8
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 4.8e-59 231.5 168 72.0
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.8e-58 229.6 168 74.4
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 2.4e-58 229.2 169 70.4
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 2.4e-58 229.2 168 74.4
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.1e-58 228.4 167 74.3
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 5.3e-58 228.0 168 74.4
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.5e-57 226.5 168 70.8
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.0e-57 226.1 168 69.6
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 2.6e-57 225.7 170 72.9
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 2.6e-57 225.7 169 72.2
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 3.4e-57 225.3 173 73.4
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 4.5e-57 224.9 168 69.6
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 5.9e-57 224.6 171 72.5
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 5.9e-57 224.6 168 70.8
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 7.7e-57 224.2 168 69.6
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 7.7e-57 224.2 168 69.6
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 7.7e-57 224.2 170 71.2
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.3e-56 223.4 168 69.0
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 1.3e-56 223.4 168 70.8
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 2.2e-56 222.6 170 70.6
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 5.0e-56 221.5 168 68.5
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 6.5e-56 221.1 170 72.9
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 6.5e-56 221.1 170 72.4
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.5e-56 221.1 168 69.0
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 6.5e-56 221.1 168 69.0
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 6.5e-56 221.1 170 70.0
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 6.5e-56 221.1 168 69.0
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 6.5e-56 221.1 168 69.6
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 6.5e-56 221.1 170 71.2
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.4e-55 219.9 170 72.4
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.4e-55 219.9 172 70.3
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 1.9e-55 219.5 168 68.5
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.9e-55 219.5 168 69.0
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.5e-55 219.2 168 73.2
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 3.2e-55 218.8 170 70.0
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.2e-55 218.8 168 69.6
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.2e-55 218.4 170 68.2
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 5.5e-55 218.0 168 68.5
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 7.2e-55 217.6 169 72.8
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 67.3
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 9.4e-55 217.2 177 68.4
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.6e-54 216.5 168 70.2
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 2.1e-54 216.1 169 69.8
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 2.1e-54 216.1 169 68.6
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 2.1e-54 216.1 168 68.5
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.1e-54 216.1 170 68.2
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 3.6e-54 215.3 170 71.2
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.0e-53 213.8 169 66.3
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.4e-53 213.4 170 67.6
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.4e-53 213.4 169 68.0
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.8e-53 213.0 171 69.6
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.8e-53 213.0 169 67.5
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 2.3e-53 212.6 169 67.5
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 68.8
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 8.8e-53 210.7 168 64.3
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.1e-52 210.3 168 64.9
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-52 210.3 168 66.7
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 2.0e-52 209.5 161 69.6
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.0e-52 209.5 169 66.9
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 2.0e-52 209.5 168 63.7
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 2.5e-52 209.1 168 69.0
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 66.9
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 3.3e-52 208.8 166 69.3
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 68.0
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 9.7e-52 207.2 168 65.5
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 2.2e-51 206.1 169 66.3
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.8e-51 205.7 173 67.6
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 2.8e-51 205.7 169 66.9
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.8e-51 205.7 170 64.1
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 2.8e-51 205.7 169 65.7
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 6.3e-51 204.5 169 66.9
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 8.2e-51 204.1 169 63.9
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 8.2e-51 204.1 169 66.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 8.2e-51 204.1 154 72.7
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.1e-50 203.8 164 66.5
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.4e-50 203.4 165 66.1
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.4e-50 203.4 170 67.6
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 4.1e-50 201.8 168 64.9
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 4.1e-50 201.8 168 65.5
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 4.1e-50 201.8 170 65.3
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 6.9e-50 201.1 168 64.9
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 1.2e-49 200.3 173 63.6
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.2e-49 200.3 164 63.4
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.5e-49 199.9 168 64.3
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 2.0e-49 199.5 169 63.9
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.9e-48 195.7 157 66.2
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.0e-48 194.9 169 64.5
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.1e-47 193.7 167 62.3
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.4e-47 193.4 169 62.7
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 4.2e-47 191.8 174 62.6
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 4.2e-47 191.8 174 62.6
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 1.2e-46 190.3 161 64.6
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.7e-46 189.1 162 62.3
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 7.9e-46 187.6 170 61.8
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.4e-45 186.8 174 61.5
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 3.9e-45 185.3 172 60.5
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.4e-42 176.0 102 80.4
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.4e-42 176.0 102 81.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 4.5e-41 171.8 169 60.9
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 5.9e-41 171.4 170 59.4
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 4.2e-39 165.2 145 66.9
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.2e-38 163.7 169 58.6
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 2.1e-38 162.9 99 75.8
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 4.0e-37 158.7 100 74.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 1.1e-36 157.1 174 51.7
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.7e-35 152.1 146 60.3
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.1e-34 149.1 171 49.7
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.5e-33 145.6 171 48.0
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.9e-31 139.8 174 47.7
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.6e-30 135.6 170 44.7
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 3.6e-30 135.6 218 43.1
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.0e-29 132.5 174 43.7
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.7e-25 119.4 148 48.0
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.2e-24 116.3 70 75.7
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 2.9e-24 115.9 145 47.6
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-23 113.6 70 74.3
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 1.9e-23 113.2 171 45.0
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 1.2e-22 110.5 181 39.8
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 4.7e-22 108.6 170 43.5
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.7e-19 100.1 180 42.8
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.6e-17 93.6 67 67.2
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.8e-16 89.0 67 62.7
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.5e-12 77.0 44 79.5
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 7.3e-07 58.2 68 60.3


User provided reference genes

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