Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 1.8e-107 392.5 189 100.0
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 3.2e-104 381.7 189 96.3
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 1.4e-102 376.3 189 95.2
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 6.7e-102 374.0 189 93.1
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 7.7e-98 360.5 189 90.5
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 1.0e-97 360.1 189 89.9
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 5.0e-97 357.8 189 89.4
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 1.5e-96 356.3 189 88.9
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 1.5e-96 356.3 189 88.9
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 2.7e-95 352.1 190 88.4
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 8.0e-95 350.5 189 86.8
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 1.1e-88 330.1 189 79.4
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.2e-79 300.1 190 72.6
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.1e-79 299.3 190 73.7
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.1e-79 299.3 190 73.7
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 8.0e-79 297.4 190 73.2
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 8.0e-79 297.4 189 73.0
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 6.8e-78 294.3 188 73.4
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 8.9e-78 293.9 189 72.5
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 7.5e-77 290.8 190 73.2
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 6.3e-76 287.7 190 71.1
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 6.3e-76 287.7 188 72.9
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 6.3e-76 287.7 190 71.1
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 1.1e-75 287.0 190 69.5
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 1.4e-75 286.6 190 68.9
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.4e-75 286.6 189 69.8
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.8e-75 286.2 186 72.0
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 3.1e-75 285.4 190 68.9
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 5.4e-75 284.6 191 68.6
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 7.0e-75 284.3 190 68.9
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 1.2e-74 283.5 191 68.1
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.2e-74 283.5 187 70.1
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.6e-74 283.1 186 72.0
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.0e-74 282.7 186 72.6
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 2.0e-74 282.7 186 71.5
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 2.0e-74 282.7 187 70.6
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 2.7e-74 282.3 190 68.9
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.7e-74 282.3 190 70.5
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 3.5e-74 282.0 186 70.4
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.5e-74 282.0 186 70.4
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 3.5e-74 282.0 187 69.5
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.5e-74 281.6 187 70.6
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.5e-74 281.6 186 70.4
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.5e-74 281.6 186 70.4
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 4.5e-74 281.6 186 69.9
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 4.5e-74 281.6 186 69.4
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 5.9e-74 281.2 190 70.0
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 5.9e-74 281.2 190 70.0
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 7.8e-74 280.8 186 70.4
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.0e-73 280.4 190 67.9
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 2.3e-73 279.3 186 68.3
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 3.8e-73 278.5 186 71.0
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 5.0e-73 278.1 190 66.8
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 5.0e-73 278.1 192 70.8
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 8.6e-73 277.3 190 68.4
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.5e-72 276.6 189 68.8
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.5e-72 276.6 189 68.8
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.5e-72 276.6 189 68.8
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 1.9e-72 276.2 189 69.8
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 2.5e-72 275.8 186 68.3
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 3.3e-72 275.4 187 68.4
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 4.3e-72 275.0 190 67.9
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 9.5e-72 273.9 186 69.4
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 1.2e-71 273.5 187 67.4
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.6e-71 273.1 190 67.9
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.6e-71 273.1 189 67.7
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 2.8e-71 272.3 190 67.9
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 8.0e-71 270.8 187 68.4
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.4e-70 270.0 205 64.4
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 2.3e-70 269.2 189 69.8
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 2.3e-70 269.2 187 68.4
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 3.1e-70 268.9 190 66.8
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 4.0e-70 268.5 190 66.3
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.2e-69 266.9 188 67.0
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.0e-69 266.2 190 65.8
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 2.0e-69 266.2 189 67.7
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 2.6e-69 265.8 188 67.0
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 3.4e-69 265.4 195 66.7
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 4.4e-69 265.0 189 69.8
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 7.5e-69 264.2 221 59.3
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 9.8e-69 263.8 188 68.1
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.3e-68 263.5 187 65.2
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 1.7e-68 263.1 182 68.1
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 4.9e-68 261.5 190 66.8
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 6.4e-68 261.2 186 67.2
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.1e-67 260.4 188 64.9
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 2.4e-67 259.2 185 64.3
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 4.1e-67 258.5 190 65.8
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 1.2e-66 256.9 226 56.6
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.6e-66 256.5 189 67.2
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 8.6e-65 250.8 192 64.6
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 8.6e-65 250.8 189 63.5
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 8.6e-65 250.8 189 61.4
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.9e-64 249.6 186 66.1
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 3.3e-64 248.8 188 62.8
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 1.6e-63 246.5 190 61.1
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.1e-63 246.1 186 60.8
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.1e-63 246.1 186 60.8
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 3.6e-63 245.4 183 63.9
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 2.3e-62 242.7 176 68.2
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 5.2e-62 241.5 187 65.2
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 6.8e-62 241.1 183 60.7
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 8.9e-62 240.7 183 62.3
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.3e-60 236.9 145 74.5
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 3.7e-60 235.3 184 60.9
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 6.0e-58 228.0 179 64.2
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 1.7e-57 226.5 144 71.5
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 3.0e-57 225.7 184 58.2
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 3.3e-56 222.2 186 59.7
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.3e-56 221.9 183 56.8
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 7.3e-56 221.1 190 58.4
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 2.1e-55 219.5 190 57.9
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 2.8e-55 219.2 173 64.2
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 4.7e-55 218.4 189 59.8
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.9e-52 208.4 148 68.9
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 1.9e-51 206.5 175 56.6
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 3.5e-50 202.2 187 52.4
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.7e-49 199.9 186 53.8
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.3e-48 195.3 132 68.9
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 5.3e-38 161.8 82 93.9
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 4.6e-34 148.7 111 60.4
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 9.9e-29 131.0 110 54.5
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.9e-28 129.4 83 72.3
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.2e-26 124.0 103 60.2
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.3e-24 115.5 115 51.3
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.7e-20 103.6 94 52.1
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.3e-17 94.0 75 62.7


User provided reference genes

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