Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 0.0e+00 1717.2 893 100.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 0.0e+00 1557.7 898 90.5
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 0.0e+00 1544.6 900 90.2
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 0.0e+00 1475.7 897 86.6
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1390.2 902 80.9
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1390.2 902 80.8
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1389.8 902 80.7
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1386.3 915 80.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 0.0e+00 1386.3 915 80.9
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1383.2 907 82.1
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1357.0 898 80.5
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1346.6 894 80.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 0.0e+00 1284.2 944 74.0
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1273.5 915 75.7
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 0.0e+00 1126.3 906 67.7
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 5.3e-274 948.0 833 63.3
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.1e-255 887.1 561 82.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 6.4e-227 791.6 555 78.7
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.6e-223 778.5 443 87.8
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 3.3e-215 752.7 761 57.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.8e-212 741.9 850 49.6
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.1e-209 733.4 859 48.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 8.7e-208 728.0 853 48.3
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.2e-202 709.5 851 47.0
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.4e-197 693.3 845 46.9
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 6.9e-197 691.8 850 46.7
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 9.0e-197 691.4 851 47.6
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 3.4e-196 689.5 856 44.4
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 5.8e-196 688.7 863 45.8
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.8e-196 688.7 866 45.6
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 3.8e-195 686.0 851 46.5
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 4.9e-195 685.6 856 44.4
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 8.4e-195 684.9 899 44.4
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.1e-193 680.2 854 46.0
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.7e-193 679.9 856 46.4
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 6.0e-193 678.7 852 44.8
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 7.9e-193 678.3 852 46.7
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.8e-192 677.2 850 45.5
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.1e-192 675.6 859 45.5
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.9e-191 673.7 853 45.4
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.1e-190 670.2 856 45.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.1e-189 667.9 852 45.2
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 3.1e-189 666.4 852 44.2
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 9.0e-189 664.8 852 44.2
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.4e-187 658.3 854 45.3
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 5.1e-184 649.0 853 43.5
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 6.7e-184 648.7 856 43.6
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.1e-183 647.9 852 43.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 3.3e-183 646.4 862 43.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 4.3e-183 646.0 851 45.0
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.7e-183 644.8 851 44.9
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 6.3e-182 642.1 844 44.8
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.4e-181 640.2 851 44.9
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 5.3e-181 639.0 817 45.0
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 2.6e-180 636.7 849 44.3
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.9e-179 633.3 849 43.2
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.5e-179 632.1 760 47.1
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 8.5e-179 631.7 841 44.9
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.2e-178 629.4 858 42.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.4e-178 628.2 851 44.2
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.1e-177 627.1 853 43.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 7.9e-177 625.2 848 43.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.0e-176 624.8 848 42.7
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 3.9e-176 622.9 774 46.1
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 3.3e-175 619.8 866 43.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 9.7e-175 618.2 869 42.9
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 2.2e-174 617.1 861 42.5
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.7e-174 616.3 851 43.8
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.4e-173 614.4 832 42.1
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 3.1e-173 613.2 841 42.9
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 6.9e-173 612.1 852 41.9
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 9.1e-173 611.7 864 42.4
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.5e-172 610.9 849 41.9
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.3e-171 607.8 853 43.5
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 3.2e-170 603.2 885 41.6
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 4.2e-170 602.8 847 43.4
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.5e-170 602.4 858 41.8
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 8.8e-168 595.1 861 41.3
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 8.8e-168 595.1 891 41.8
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.7e-166 590.9 848 41.6
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 3.1e-165 586.6 891 41.2
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.3e-165 585.9 846 40.9
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 9.1e-165 585.1 843 40.1
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 7.7e-164 582.0 852 42.0
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.2e-163 580.5 838 41.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.9e-162 577.4 871 41.1
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 4.2e-162 576.2 823 42.8
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 7.2e-162 575.5 853 40.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.4e-162 575.1 862 41.5
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.1e-161 573.9 846 40.9
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.6e-161 573.2 875 40.8
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-159 568.2 861 40.3
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.3e-159 566.6 843 41.2
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 7.4e-159 565.5 863 41.0
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.7e-151 539.3 854 39.7
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.8e-150 537.0 857 39.7
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.5e-148 530.0 845 37.6
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 2.9e-147 526.9 923 37.3
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.4e-146 521.9 839 37.3
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.6e-145 521.2 848 38.1
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 2.3e-144 517.3 865 37.9
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 8.8e-144 515.4 849 40.6
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 9.1e-141 505.4 862 38.1
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.7e-140 503.8 523 53.2
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 7.2e-138 495.7 677 43.4
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.3e-136 490.7 698 41.0
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 2.6e-135 487.3 848 36.0
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 7.0e-125 452.6 814 34.8
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.5e-122 444.1 754 38.1
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 7.3e-122 442.6 1312 28.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.4e-119 433.3 566 46.1
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.9e-114 417.9 410 54.9
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-113 414.8 351 64.4
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.2e-111 408.7 465 48.4
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.2e-110 404.4 282 67.0
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.2e-109 400.6 880 33.3
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.2e-105 388.7 854 33.3
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 3.6e-105 387.1 283 64.0
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.4e-104 385.2 868 31.9
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.5e-103 381.7 1339 26.0
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 5.3e-96 356.7 285 61.8
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.0e-91 340.9 847 31.5
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 5.6e-90 336.7 271 61.3
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 4.8e-89 333.6 363 46.6
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.4e-85 321.2 241 71.4
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 5.7e-74 283.5 632 31.8
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 3.8e-70 270.8 783 29.6
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.5e-68 264.2 393 41.0
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 8.2e-65 253.1 139 89.9
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-64 252.7 473 34.2
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.1e-64 250.8 321 42.4
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 3.4e-63 247.7 195 58.5
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 5.9e-63 246.9 389 39.1
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 7.7e-63 246.5 340 42.4
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.2e-60 239.2 178 64.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.3e-59 235.0 1088 23.1
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.9e-56 223.4 363 38.6
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 9.1e-56 223.0 383 33.4
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 8.5e-54 216.5 383 37.3
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-48 199.5 427 32.1
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.5e-45 189.1 100 92.0
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.3e-41 176.0 417 32.9
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.7e-38 165.6 252 37.7
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 7.5e-34 150.2 81 87.7
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.3e-33 147.1 443 29.8
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.4e-32 145.2 120 58.3
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.9e-29 135.6 406 26.1
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 5.5e-29 134.0 88 67.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.8e-27 129.0 89 70.8
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.6e-26 125.2 84 64.3
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.4e-24 119.4 80 72.5
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.1e-24 118.2 153 43.1
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 4.1e-24 117.9 255 32.2
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 5.4e-24 117.5 230 45.7
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.0e-23 115.5 161 39.1
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 4.5e-23 114.4 126 44.4
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 4.3e-21 107.8 110 48.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.7e-20 104.4 53 88.7
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.3e-19 102.1 55 87.3
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 6.8e-19 100.5 152 40.8
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.8e-16 92.4 312 25.6
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 4.1e-16 91.3 255 28.6
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 3.9e-14 84.7 158 33.5
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 3.3e-13 81.6 91 42.9
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 5.6e-13 80.9 115 36.5
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.6e-12 79.3 160 33.8
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 4.7e-12 77.8 93 40.9
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 7.5e-10 70.5 107 41.1
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.9e-09 68.6 122 31.1
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 8.3e-09 67.0 194 27.3
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 5.4e-08 64.3 95 45.3
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 5.4e-08 64.3 84 41.7
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.0e-06 60.1 120 36.7


User provided reference genes

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