Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0567 Capsella rubella HOM05D001068 ORTHO05D013681 6.5e-54 213.8 106 100.0
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 8.9e-27 123.6 82 76.8
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 8.9e-27 123.6 82 76.8
AT3G06690 Arabidopsis thaliana HOM05D001068 ORTHO05D013681 2.6e-26 122.1 82 75.6
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 4.4e-26 121.3 82 75.6
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 5.8e-26 120.9 82 74.4
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 5.8e-26 120.9 82 74.4
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 9.8e-26 120.2 82 73.2
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 1.3e-25 119.8 82 74.4
BcaC05g24277 Brassica carinata HOM05D001068 ORTHO05D002190 1.7e-25 119.4 83 71.1
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 2.2e-25 119.0 82 73.2
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 2.2e-25 119.0 82 72.0
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 2.9e-25 118.6 82 72.0
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 2.9e-25 118.6 82 72.0
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 4.9e-25 117.9 82 72.0
BcaC05g24285 Brassica carinata HOM05D001068 ORTHO05D013681 6.4e-25 117.5 69 81.2
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 5.4e-24 114.4 83 69.9
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 5.4e-24 114.4 82 69.5
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 7.0e-24 114.0 82 68.3
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 9.2e-24 113.6 82 70.7
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 9.2e-24 113.6 69 79.7
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 1.2e-23 113.2 83 68.7
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 6.0e-23 110.9 83 68.7
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 6.0e-23 110.9 83 68.7
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 6.0e-23 110.9 83 68.7
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 9.5e-21 103.6 86 58.1
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 2.1e-20 102.4 82 62.2
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 2.1e-20 102.4 77 64.9
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 4.7e-20 101.3 86 58.1
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 8.1e-20 100.5 81 61.7
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 8.1e-20 100.5 90 56.7
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 1.1e-19 100.1 82 61.0
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 1.1e-19 100.1 82 62.2
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 1.4e-19 99.8 82 62.2
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 1.4e-19 99.8 82 61.0
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 1.4e-19 99.8 66 72.7
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 1.8e-19 99.4 69 68.1
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 1.8e-19 99.4 85 58.8
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 2.3e-19 99.0 93 55.9
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 2.3e-19 99.0 82 61.0
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 2.3e-19 99.0 82 61.0
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 2.3e-19 99.0 98 53.1
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 3.1e-19 98.6 90 53.3
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 3.1e-19 98.6 79 62.0
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 3.1e-19 98.6 82 58.5
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 3.1e-19 98.6 77 63.6
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 4.0e-19 98.2 82 61.0
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 4.0e-19 98.2 82 59.8
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 4.0e-19 98.2 82 59.8
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 4.0e-19 98.2 69 69.6
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 5.2e-19 97.8 82 61.0
ECA236G4578 Erigeron canadensis HOM05D001068 ORTHO05D002190 5.2e-19 97.8 89 56.2
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 5.2e-19 97.8 89 56.2
Lsat_1_v5_gn_4_28520 Lactuca sativa HOM05D001068 ORTHO05D002190 5.2e-19 97.8 82 61.0
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 5.2e-19 97.8 82 56.1
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 5.2e-19 97.8 82 58.5
DCAR_010695 Daucus carota HOM05D001068 ORTHO05D002190 6.8e-19 97.4 81 60.5
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 6.8e-19 97.4 89 57.3
GSVIVG01020650001 Vitis vinifera HOM05D001068 ORTHO05D002190 6.8e-19 97.4 82 58.5
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 8.9e-19 97.1 69 66.7
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 8.9e-19 97.1 82 61.0
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 8.9e-19 97.1 86 53.5
HanXRQChr16g0526381 Helianthus annuus HOM05D001068 ORTHO05D002190 1.2e-18 96.7 82 58.5
HanXRQChr16g0526411 Helianthus annuus HOM05D001068 ORTHO05D013681 1.2e-18 96.7 82 58.5
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 1.2e-18 96.7 82 59.8
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 1.5e-18 96.3 82 58.5
VMungo1127G1678 Vigna mungo HOM05D001068 ORTHO05D002190 1.5e-18 96.3 82 58.5
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 2.0e-18 95.9 82 57.3
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 2.0e-18 95.9 82 57.3
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 2.6e-18 95.5 82 57.3
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 2.6e-18 95.5 82 57.3
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 3.4e-18 95.1 79 60.8
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 3.4e-18 95.1 82 57.3
AUR62035387 Chenopodium quinoa HOM05D001068 ORTHO05D002190 4.4e-18 94.7 82 57.3
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 4.4e-18 94.7 82 57.3
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 4.4e-18 94.7 82 56.1
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 4.4e-18 94.7 69 65.2
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 5.8e-18 94.4 82 57.3
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 5.8e-18 94.4 82 56.1
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 5.8e-18 94.4 93 53.8
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 7.5e-18 94.0 93 53.8
MD09G1241500 Malus domestica HOM05D001068 ORTHO05D013681 7.5e-18 94.0 69 63.8
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 7.5e-18 94.0 82 56.1
Oeu038268.1 Olea europaea HOM05D001068 ORTHO05D013681 7.5e-18 94.0 67 64.2
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 7.5e-18 94.0 82 57.3
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 9.8e-18 93.6 82 56.1
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 9.8e-18 93.6 82 57.3
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 1.3e-17 93.2 82 57.3
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 1.3e-17 93.2 82 57.3
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 1.3e-17 93.2 81 56.8
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 1.3e-17 93.2 82 56.1
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 1.3e-17 93.2 82 57.3
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 1.7e-17 92.8 69 65.2
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.7e-17 92.8 82 56.1
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.7e-17 92.8 82 56.1
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 1.7e-17 92.8 82 56.1
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 2.2e-17 92.4 82 56.1
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 2.2e-17 92.4 69 63.8
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 2.2e-17 92.4 81 58.0
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 2.9e-17 92.0 83 56.6
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.9e-17 92.0 82 56.1
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 3.7e-17 91.7 81 56.8
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 3.7e-17 91.7 82 56.1
ECA234G0082 Erigeron canadensis HOM05D001068 ORTHO05D002190 4.9e-17 91.3 81 55.6
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 6.4e-17 90.9 63 68.3
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 6.4e-17 90.9 63 68.3
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 6.4e-17 90.9 85 54.1
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 6.4e-17 90.9 82 54.9
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 8.3e-17 90.5 82 56.1
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 8.3e-17 90.5 82 52.4
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 8.3e-17 90.5 82 52.4
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 8.3e-17 90.5 81 55.6
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 8.3e-17 90.5 69 60.9
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 1.1e-16 90.1 82 54.9
DCAR_021268 Daucus carota HOM05D001068 ORTHO05D002190 1.1e-16 90.1 85 55.3
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 1.1e-16 90.1 98 48.0
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.1e-16 90.1 82 52.4
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.1e-16 90.1 63 65.1
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 1.4e-16 89.7 82 53.7
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.9e-16 89.4 63 66.7
Gohir.D02G176600 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.9e-16 89.4 63 65.1
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 1.9e-16 89.4 90 53.3
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 2.4e-16 89.0 90 53.3
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 3.2e-16 88.6 63 65.1
GSVIVG01023773001 Vitis vinifera HOM05D001068 ORTHO05D013681 3.2e-16 88.6 82 54.9
BcaB02g06788 Brassica carinata HOM05D001068 ORTHO05D002190 4.1e-16 88.2 82 63.4
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 2.1e-15 85.9 82 51.2
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 2.1e-15 85.9 82 52.4
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 2.7e-15 85.5 82 51.2
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 6.0e-15 84.3 82 48.8
Cc00_g26970 Coffea canephora HOM05D001068 ORTHO05D013681 6.0e-15 84.3 69 59.4
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 2.5e-13 79.0 83 49.4
SEGI_21730 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.3e-13 77.4 83 51.8
SEGI_20994 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 2.1e-12 75.9 83 49.4
Pp3c26_540 Physcomitrium patens HOM05D001068 ORTHO05D002190 6.2e-12 74.3 82 47.6
BcaC05g24280 Brassica carinata HOM05D001068 ORTHO05D002190 8.1e-12 73.9 54 74.1
A10p05030 Brassica napus HOM05D001068 ORTHO05D013681 1.4e-11 73.2 67 58.2
SEGI_29810 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 1.4e-11 73.2 80 50.0
Pp3c13_22370 Physcomitrium patens HOM05D001068 ORTHO05D002190 2.3e-11 72.4 83 45.8
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 2.0e-10 69.3 57 68.4
Lsat_1_v5_gn_4_28500 Lactuca sativa HOM05D001068 ORTHO05D013681 4.4e-10 68.2 60 60.0
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 1.3e-09 66.6 81 40.7
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis HOM05D001068 ORTHO05D002190 1.7e-09 66.2 81 40.7
Dinv19990 Davidia involucrata HOM05D001068 ORTHO05D002190 4.9e-09 64.7 78 48.7
Mapoly0007s0119 Marchantia polymorpha HOM05D001068 ORTHO05D002190 5.4e-08 61.2 81 42.0
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 2.7e-07 58.9 61 55.7
Aa31LG1G8290 Aethionema arabicum HOM05D001068 ORTHO05D013681 3.9e-06 55.1 61 57.4


User provided reference genes

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