Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-82 309.7 152 100.0
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.8e-81 305.8 152 99.3
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-62 243.0 153 81.7
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.6e-58 229.6 154 77.9
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 5.3e-57 224.6 153 77.1
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.9e-52 208.4 158 71.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 8.8e-52 207.2 154 72.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.5e-51 206.5 152 71.7
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 8.2e-50 200.7 152 69.7
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 7.2e-46 187.6 152 65.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.0e-43 179.5 152 62.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.2e-37 160.2 152 58.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 4.7e-21 105.1 154 38.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.3e-20 102.8 157 40.1
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.8e-20 100.9 152 39.5
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.2e-19 100.5 154 40.9
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-19 100.5 152 39.5
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.6e-19 99.4 158 39.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.8e-19 97.4 147 39.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.7e-18 96.7 152 38.8
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.7e-18 96.7 150 38.0
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.7e-18 95.5 135 41.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 4.9e-18 95.1 136 41.9
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.9e-18 95.1 158 39.2
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.9e-18 95.1 158 39.2
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.3e-18 94.7 147 38.8
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 6.3e-18 94.7 154 39.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.1e-17 94.0 159 35.8
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.4e-17 93.6 159 40.9
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.4e-17 93.6 119 43.7
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 5.4e-17 91.7 164 35.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 9.2e-17 90.9 144 39.6
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.2e-16 90.5 160 40.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.0e-16 89.7 156 39.1
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-16 89.7 158 38.0
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 2.7e-16 89.4 159 36.5
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.5e-16 89.0 157 37.6
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.8e-16 87.8 125 38.4
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.0e-15 87.4 133 41.4
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.9e-15 85.9 76 53.9
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.8e-15 85.5 131 42.7
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.6e-15 84.7 155 35.5
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.6e-15 84.3 148 38.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.5e-14 82.8 175 36.6
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.3e-14 82.4 155 34.8
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 4.3e-14 82.0 105 42.9
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.3e-14 81.3 148 37.8
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 7.3e-14 81.3 157 33.8
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.3e-14 81.3 122 40.2
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 7.3e-14 81.3 150 33.3
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-13 80.5 148 37.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.6e-13 80.1 151 35.1
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.7e-13 78.6 155 33.5
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 4.7e-13 78.6 154 35.1
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 8.0e-13 77.8 150 35.3
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 8.0e-13 77.8 137 36.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.0e-12 77.4 154 36.4
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-12 77.0 105 41.0
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.8e-12 76.6 169 34.3
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.3e-12 76.3 175 36.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.0e-12 75.9 173 35.8
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 4.0e-12 75.5 164 37.8
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.8e-12 74.7 129 40.3
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 6.8e-12 74.7 70 52.9
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.2e-11 73.9 105 37.1
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.5e-11 73.6 75 46.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.5e-11 73.6 158 35.4
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.6e-11 72.8 137 33.6
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.6e-11 72.8 75 46.7
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.6e-11 72.8 73 45.2
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.4e-11 72.4 160 33.8
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.4e-11 72.0 134 35.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 5.7e-11 71.6 88 43.2
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.7e-11 71.6 116 37.9
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.7e-11 71.6 168 32.7
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.7e-11 71.6 73 45.2
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 7.5e-11 71.2 163 31.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 9.8e-11 70.9 147 34.0
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 9.8e-11 70.9 154 33.8
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-10 70.5 123 36.6
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-10 70.5 73 43.8
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-10 70.5 73 43.8
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.7e-10 70.1 139 33.1
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.7e-10 70.1 128 36.7
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.7e-10 70.1 132 33.3
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.7e-10 70.1 120 38.3
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-10 69.7 125 36.8
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.2e-10 69.7 125 37.6
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.2e-10 69.7 111 35.1
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.9e-10 69.3 122 36.1
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.9e-10 69.3 80 42.5
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.9e-10 69.3 159 34.6
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.7e-10 68.9 165 35.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.7e-10 68.9 107 37.4
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.7e-10 68.9 73 45.2
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 4.9e-10 68.6 73 43.8
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.4e-10 68.2 158 32.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 8.3e-10 67.8 119 38.7
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-09 67.4 125 36.0
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.1e-09 67.4 101 40.6
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.4e-09 67.0 160 31.9
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.4e-09 67.0 87 43.7
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.4e-09 67.0 73 42.5
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.8e-09 66.6 62 51.6
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.2e-09 65.9 134 33.6
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.1e-09 65.5 137 32.1
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 4.1e-09 65.5 91 44.0
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 5.4e-09 65.1 71 46.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.4e-09 65.1 72 44.4
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 5.4e-09 65.1 103 37.9
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 9.2e-09 64.3 91 41.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 9.2e-09 64.3 160 31.9
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 9.2e-09 64.3 160 31.9
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-08 63.9 127 32.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-08 63.9 160 29.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.2e-08 63.9 127 32.3
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.2e-08 63.9 158 32.3
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-08 63.9 73 39.7
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.2e-08 63.9 139 32.4
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.6e-08 63.5 123 34.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 1.6e-08 63.5 75 41.3
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.0e-08 63.2 155 29.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.7e-08 62.8 103 37.9
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.7e-08 62.8 158 30.4
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.7e-08 62.8 158 30.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.7e-08 62.8 149 31.5
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 3.5e-08 62.4 158 31.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.5e-08 62.4 73 42.5
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 4.6e-08 62.0 95 35.8
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.6e-08 62.0 73 42.5
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.6e-08 62.0 102 41.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.8e-08 61.2 137 33.6
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 7.8e-08 61.2 71 43.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 7.8e-08 61.2 143 30.8
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.8e-08 61.2 106 33.0
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.7e-07 60.1 71 42.3
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.0e-07 59.3 165 29.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.9e-07 58.9 78 37.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.0e-07 58.5 102 32.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.6e-07 58.2 137 30.7
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.6e-07 57.8 115 33.0
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.1e-06 57.4 117 31.6


User provided reference genes

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