Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 5.7e-109 397.5 191 100.0
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 5.7e-109 397.5 191 100.0
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.8e-107 392.5 191 97.9
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 4.1e-107 391.3 191 97.4
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 4.1e-107 391.3 191 97.4
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 9.5e-104 380.2 186 95.7
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 9.5e-104 380.2 186 95.7
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 9.5e-104 380.2 186 95.7
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 9.5e-104 380.2 186 96.2
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.2e-103 379.8 186 95.7
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.6e-103 379.4 186 95.2
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 2.1e-103 379.0 186 95.7
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 2.8e-103 378.6 186 95.7
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.8e-103 378.6 189 94.2
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 3.6e-103 378.3 185 96.2
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 6.2e-103 377.5 186 95.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 6.2e-103 377.5 186 95.7
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 8.0e-103 377.1 189 94.2
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.2
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.2
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.2
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 184 95.7
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 184 95.7
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.4e-102 376.3 186 95.2
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.8e-102 375.9 189 94.2
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 185 96.2
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 2.3e-102 375.6 186 95.2
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.3e-102 375.6 186 95.2
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.3e-102 375.6 186 94.6
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.1e-102 375.2 186 95.2
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 4.0e-102 374.8 186 94.6
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 4.0e-102 374.8 186 94.6
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 4.0e-102 374.8 189 93.1
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 6.8e-102 374.0 186 94.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 6.8e-102 374.0 189 93.7
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 6.8e-102 374.0 185 95.1
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 6.8e-102 374.0 185 95.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 6.8e-102 374.0 185 95.1
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 8.9e-102 373.6 186 94.1
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.2e-101 373.2 190 93.2
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.5e-101 372.9 187 94.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 95.7
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 95.7
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.5e-101 372.9 186 94.1
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.0e-101 372.5 185 94.6
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.0e-101 372.5 189 93.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.0e-101 372.5 186 94.1
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.6e-101 372.1 189 93.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.6e-101 372.1 189 92.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 93.5
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 93.5
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 93.5
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 94.1
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.4e-101 371.7 185 94.6
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 3.4e-101 371.7 182 95.6
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-101 371.7 183 96.7
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.4e-101 371.7 186 93.5
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 3.4e-101 371.7 184 93.5
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.4e-101 371.3 189 92.6
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.4e-101 371.3 187 94.1
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 4.4e-101 371.3 189 93.1
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 94.6
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 93.0
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 93.5
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 93.5
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 5.8e-101 370.9 190 93.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 93.0
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 7.5e-101 370.5 189 92.1
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 7.5e-101 370.5 189 92.1
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 7.5e-101 370.5 189 92.1
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 9.8e-101 370.2 186 93.5
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.8e-101 370.2 186 92.5
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.8e-101 370.2 186 92.5
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.8e-101 370.2 186 92.5
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 9.8e-101 370.2 184 94.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 9.8e-101 370.2 189 91.0
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.3e-100 369.8 186 92.5
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.7e-100 369.4 185 94.1
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.7e-100 369.4 189 92.1
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.7e-100 369.4 184 93.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-100 369.4 183 96.2
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.7e-100 369.4 183 96.2
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.7e-100 369.4 186 93.0
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.7e-100 369.4 184 95.1
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.2e-100 369.0 185 93.5
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 2.2e-100 369.0 186 91.9
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.2e-100 369.0 186 92.5
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.9e-100 368.6 184 93.5
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.9e-100 368.6 186 92.5
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 2.9e-100 368.6 186 93.0
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 3.7e-100 368.2 186 93.0
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 3.7e-100 368.2 189 91.5
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 3.7e-100 368.2 189 91.5
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 3.7e-100 368.2 186 91.9
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 3.7e-100 368.2 186 93.0
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 93.0
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 93.0
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 92.5
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 91.9
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 8.3e-100 367.1 206 86.4
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.1e-99 366.7 189 91.5
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.1e-99 366.7 186 92.5
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 91.5
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 91.5
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 91.5
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 91.9
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 92.5
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 93.0
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 91.9
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 93.5
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 2.4e-99 365.5 186 91.4
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 4.1e-99 364.8 189 89.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 5.4e-99 364.4 184 91.3
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.2e-98 363.2 198 87.9
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 90.9
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 2.7e-98 362.1 197 88.3
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 4.6e-98 361.3 189 90.5
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 4.6e-98 361.3 185 91.9
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 6.0e-98 360.9 189 89.9
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 8.6e-97 357.1 186 90.3
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 2.5e-96 355.5 186 89.2
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 2.5e-96 355.5 186 89.2
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 4.3e-96 354.8 186 89.8
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 4.7e-95 351.3 190 87.4
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 8.1e-95 350.5 184 89.1
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.1e-94 348.6 182 87.9
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 5.2e-94 347.8 252 70.2
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.2e-93 346.7 189 85.2
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 6.4e-92 340.9 182 87.9
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-90 336.3 183 89.6
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 3.3e-88 328.6 191 82.2
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 4.3e-88 328.2 183 80.9
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.7e-87 324.7 161 93.8
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 6.2e-87 324.3 182 84.1
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.4e-83 311.2 186 80.6
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 2.5e-80 302.4 152 90.8
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.9e-76 288.9 142 95.8
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 2.1e-74 282.7 143 90.2
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 6.0e-74 281.2 142 92.3
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.1e-72 276.9 140 90.7
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.0e-70 268.5 130 93.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-66 256.9 128 89.8
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.6e-66 256.5 136 88.2
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.1e-66 256.1 164 78.0
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.0e-66 254.6 187 69.5
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.7e-65 251.1 148 82.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.9e-64 249.6 186 69.9
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.0e-57 227.3 188 53.2
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.1e-56 223.8 189 54.5
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.0e-52 210.7 166 66.3
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 6.7e-49 198.0 157 66.2
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.4e-46 189.5 90 94.4
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-45 185.7 115 77.4
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.5e-44 181.4 90 91.1
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.5e-43 178.3 87 92.0
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.2e-43 177.9 103 80.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-42 176.8 87 90.8
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.7e-42 176.0 87 90.8
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.0e-41 174.1 87 90.8
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.8e-41 173.3 87 89.7
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.8e-41 173.3 87 89.7
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.1e-38 162.5 177 52.0
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.1e-38 162.2 87 87.4
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.1e-35 154.1 96 81.2
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.2e-35 152.5 79 87.3
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 7.9e-34 147.9 97 77.3
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 5.1e-33 145.2 69 88.4
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 6.3e-31 138.3 70 95.7
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.8e-28 129.0 62 90.3
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.8e-28 129.0 62 90.3
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.8e-28 129.0 62 90.3
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.8e-28 129.0 62 90.3
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.8e-28 129.0 62 90.3
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.8e-28 129.0 62 90.3
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 1.3e-15 87.4 44 90.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 3.1e-14 82.8 43 93.0
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 5.3e-14 82.0 55 74.5


User provided reference genes

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