Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.9e-118 429.1 203 100.0
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.9e-118 429.1 203 100.0
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 2.9e-95 352.1 203 80.3
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.7e-90 336.3 204 75.5
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.4e-89 332.4 205 75.6
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 3.5e-88 328.6 206 74.8
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 3.5e-88 328.6 206 74.8
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.1e-86 323.6 208 74.0
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.2e-82 309.3 196 71.4
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 3.2e-81 305.4 191 75.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 4.1e-81 305.1 198 73.7
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.3e-79 300.1 196 70.9
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 1.3e-79 300.1 195 69.7
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.3e-79 299.3 203 70.0
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 3.0e-79 298.9 203 68.0
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 8.6e-79 297.4 195 69.7
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 1.5e-78 296.6 195 69.7
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.5e-78 296.6 208 65.9
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.9e-78 296.2 194 70.6
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 2.5e-78 295.8 195 69.7
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 7.3e-78 294.3 194 70.6
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 9.5e-78 293.9 196 67.3
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.1e-77 292.7 203 66.5
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 2.1e-77 292.7 196 67.3
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.8e-77 292.4 203 68.0
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.6e-77 292.0 203 67.0
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 3.6e-77 292.0 203 63.5
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 8.1e-77 290.8 196 67.3
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 8.1e-77 290.8 194 67.0
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.4e-76 290.0 198 65.7
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.4e-76 290.0 196 66.8
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.8e-76 289.7 191 69.6
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.3e-76 289.3 195 68.7
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.1e-76 288.9 195 68.7
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 6.8e-76 287.7 204 64.7
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.2e-75 287.0 204 63.7
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.2e-75 287.0 197 66.5
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 1.5e-75 286.6 205 67.8
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 2.0e-75 286.2 194 67.5
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 2.6e-75 285.8 197 65.0
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.6e-75 285.8 194 70.1
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 2.6e-75 285.8 187 69.5
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 3.4e-75 285.4 196 65.3
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 4.4e-75 285.0 203 63.1
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.3e-74 283.5 198 65.2
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.7e-74 283.1 203 64.0
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 2.9e-74 282.3 223 61.0
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.7e-74 282.0 196 65.8
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 4.9e-74 281.6 195 65.1
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 4.9e-74 281.6 203 62.6
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.4e-73 279.3 196 66.3
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 5.4e-73 278.1 200 63.0
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 9.2e-73 277.3 203 62.6
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.6e-72 275.0 203 62.6
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 6.0e-72 274.6 203 62.6
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 6.0e-72 274.6 195 64.6
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.7e-71 273.1 208 60.6
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.3e-71 272.7 203 63.1
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.3e-71 272.7 195 63.6
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 2.3e-71 272.7 195 63.6
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.3e-71 272.7 201 63.7
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 3.0e-71 272.3 196 64.3
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 3.9e-71 271.9 208 60.6
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.9e-71 271.9 203 62.1
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 6.6e-71 271.2 201 61.7
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-70 270.4 203 61.6
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 7.3e-70 267.7 195 63.1
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 7.3e-70 267.7 203 61.1
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 7.3e-70 267.7 192 62.5
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 9.5e-70 267.3 203 62.1
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.2e-69 266.9 193 62.7
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.6e-69 266.5 190 63.2
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 4.7e-69 265.0 197 60.4
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 6.2e-69 264.6 205 60.0
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.1e-68 263.8 198 61.1
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.4e-68 263.5 206 60.7
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.8e-68 263.1 189 61.9
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 2.3e-68 262.7 197 61.9
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 4.0e-68 261.9 196 60.2
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 5.2e-68 261.5 193 62.7
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 6.8e-68 261.2 198 61.1
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 1.5e-67 260.0 199 62.3
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 2.6e-67 259.2 198 60.1
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 7.6e-67 257.7 161 76.4
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 9.9e-67 257.3 188 61.7
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.2e-66 256.1 201 58.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 4.9e-66 255.0 190 61.1
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 8.4e-66 254.2 276 47.1
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.1e-65 253.8 194 61.9
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.1e-65 253.8 184 61.4
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.4e-65 253.4 191 60.2
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 2.4e-65 252.7 190 61.1
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 4.1e-65 251.9 190 61.1
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 5.4e-65 251.5 192 60.4
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 7.1e-65 251.1 197 60.4
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 7.1e-65 251.1 194 60.3
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 7.1e-65 251.1 201 57.7
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 9.2e-65 250.8 196 59.7
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 1.6e-64 250.0 190 60.5
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.1e-64 249.6 203 60.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.5e-64 248.8 188 60.1
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.0e-63 247.3 208 57.7
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 3.0e-63 245.7 195 59.0
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.1e-62 243.8 183 61.2
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 1.1e-62 243.8 183 60.7
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 4.3e-62 241.9 184 61.4
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 4.3e-62 241.9 195 54.9
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 3.6e-61 238.8 183 60.7
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 3.6e-61 238.8 183 60.7
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 3.6e-61 238.8 203 56.7
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.7e-58 229.9 196 54.6
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.9e-58 229.2 275 45.1
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.4e-57 226.9 135 69.6
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 3.2e-57 225.7 165 64.8
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 5.4e-57 224.9 204 54.9
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.2e-56 223.8 205 52.7
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.6e-56 223.4 137 77.4
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 6.0e-56 221.5 212 53.3
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 8.1e-53 211.1 191 50.8
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.4e-51 205.7 176 55.1
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 4.4e-51 205.3 132 63.6
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 5.8e-51 204.9 143 66.4
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 7.6e-51 204.5 197 51.3
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.8e-50 202.2 144 59.0
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.4e-49 199.5 190 50.5
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 3.2e-49 199.1 160 60.0
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 4.2e-49 198.7 162 58.0
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 9.3e-49 197.6 195 47.2
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 1.2e-48 197.2 201 47.8
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 2.1e-48 196.4 205 49.8
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 2.1e-48 196.4 192 49.0
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 2.1e-48 196.4 186 52.2
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 1.3e-47 193.7 187 48.7
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.9e-47 192.2 154 56.5
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.1e-46 190.7 142 61.3
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 2.5e-46 189.5 190 53.2
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.5e-46 189.5 185 50.8
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 4.3e-46 188.7 188 44.1
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.3e-42 177.2 170 48.8
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.7e-42 176.8 182 45.1
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 4.9e-42 175.3 187 42.8
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.1e-41 174.1 198 41.4
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 5.5e-41 171.8 136 60.3
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 5.1e-39 165.2 100 66.0
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.0e-34 151.0 205 42.0
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 1.7e-34 150.2 190 37.9
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 4.2e-33 145.6 205 41.5
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 9.3e-33 144.4 144 49.3
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.8e-31 140.2 187 41.2
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.8e-31 140.2 187 41.2
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 6.7e-31 138.3 185 40.0
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 8.4e-26 121.3 208 35.6
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.5e-25 118.6 83 57.8
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.1e-23 112.1 83 54.2
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.0e-15 87.8 154 38.3
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 3.3e-14 82.8 157 29.3
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 5.7e-14 82.0 157 28.7
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 9.7e-14 81.3 157 28.7
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 2.2e-13 80.1 153 32.0
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 8.2e-13 78.2 153 30.7
Aa31LG9G2030 Aethionema arabicum HOM05D006348 ORTHO05D008261 1.1e-12 77.8 157 29.3
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 2.4e-12 76.6 153 30.1
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 6.9e-12 75.1 152 27.6
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 6.9e-12 75.1 153 29.4
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 9.1e-12 74.7 66 51.5
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 3.4e-11 72.8 153 30.1
SHI24912 Sapria himalayana HOM05D006348 ORTHO05D008261 1.3e-10 70.9 151 30.5
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 2.9e-10 69.7 57 70.2
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 5.5e-09 65.5 152 27.0
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 3.6e-08 62.8 39 64.1
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 3.9e-07 59.3 49 44.9
RcHm_v2.0_Chr2g0158561 Rosa chinensis HOM05D006348 ORTHO05D008261 4.4e-06 55.8 102 31.4


User provided reference genes

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