Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.2e-118 429.1 233 100.0
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.2e-118 429.1 233 100.0
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.2e-60 237.3 155 83.2
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.6e-60 236.9 264 58.3
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 9.9e-55 217.6 146 79.5
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 9.9e-55 217.6 146 79.5
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 6.4e-54 214.9 222 63.5
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 8.4e-54 214.5 185 69.7
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 5.5e-53 211.8 140 80.0
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 7.1e-53 211.5 184 63.0
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 9.3e-53 211.1 140 79.3
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 2.1e-52 209.9 151 75.5
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 7.9e-52 208.0 218 59.6
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 2.3e-51 206.5 146 74.7
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 2.5e-50 203.0 138 74.6
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.7e-49 199.1 151 68.2
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 4.0e-48 195.7 141 72.3
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 6.9e-48 194.9 169 60.9
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.0e-47 193.4 138 74.6
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 2.0e-47 193.4 150 66.7
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 4.5e-47 192.2 150 70.7
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.5e-47 192.2 149 67.1
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.5e-47 192.2 149 67.1
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 4.5e-47 192.2 149 67.1
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 5.8e-47 191.8 146 68.5
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 5.8e-47 191.8 171 60.8
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 7.6e-47 191.4 145 69.0
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 7.6e-47 191.4 150 66.7
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 1.0e-46 191.0 148 66.9
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 1.7e-46 190.3 145 67.6
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.7e-46 190.3 146 67.8
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.7e-46 190.3 146 68.5
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.7e-46 190.3 148 68.2
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 1.7e-46 190.3 143 69.9
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 2.2e-46 189.9 143 70.6
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 2.2e-46 189.9 148 67.6
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 2.2e-46 189.9 136 72.8
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 2.9e-46 189.5 153 65.4
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.9e-46 189.5 176 62.5
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.9e-46 189.5 143 67.8
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 3.8e-46 189.1 148 67.6
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 4.9e-46 188.7 145 66.9
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 4.9e-46 188.7 146 67.1
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 4.9e-46 188.7 145 66.9
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 4.9e-46 188.7 145 66.9
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 4.9e-46 188.7 146 67.1
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 6.5e-46 188.3 148 70.3
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 8.4e-46 188.0 141 73.0
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 8.4e-46 188.0 141 73.0
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 8.4e-46 188.0 148 69.6
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.4e-45 187.2 155 65.2
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.4e-45 187.2 143 67.1
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.4e-45 187.2 143 67.1
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.9e-45 186.8 143 68.5
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 7.1e-45 184.9 138 72.5
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 9.3e-45 184.5 140 67.9
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 9.3e-45 184.5 213 59.2
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 1.2e-44 184.1 138 73.2
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.2e-44 184.1 146 67.1
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.1e-44 183.3 145 69.0
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.1e-44 183.3 145 69.0
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 2.1e-44 183.3 149 65.8
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 6.0e-44 181.8 137 71.5
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 6.0e-44 181.8 148 64.2
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.0e-43 181.0 143 67.1
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.3e-43 180.6 135 71.9
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.8e-43 180.3 145 68.3
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.3e-43 179.9 151 64.9
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 3.9e-43 179.1 148 66.2
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 1.5e-42 177.2 149 63.8
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 2.5e-42 176.4 130 69.2
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 2.5e-42 176.4 143 67.8
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 3.3e-42 176.0 189 61.9
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 3.3e-42 176.0 156 63.5
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 4.3e-42 175.6 132 67.4
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.7e-42 175.3 138 69.6
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 7.4e-42 174.9 121 74.4
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 9.7e-42 174.5 124 74.2
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.3e-41 174.1 156 64.1
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 3.7e-41 172.6 152 61.2
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.7e-41 172.6 128 71.9
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.7e-41 172.6 148 62.8
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 6.3e-41 171.8 149 63.1
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 6.3e-41 171.8 180 53.9
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.1e-40 171.0 187 54.0
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.1e-40 171.0 143 62.2
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 4.1e-40 169.1 139 66.2
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 6.9e-40 168.3 148 62.8
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.0e-39 166.8 128 66.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.6e-39 166.4 131 64.9
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 5.9e-39 165.2 128 65.6
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.3e-38 164.1 184 53.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.9e-38 162.9 143 62.9
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 5.0e-38 162.2 162 59.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.9e-37 160.2 122 73.8
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.2e-36 157.5 134 67.2
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 2.8e-33 146.4 142 57.7
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 6.3e-33 145.2 121 62.8
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 2.4e-32 143.3 143 54.5
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 2.4e-32 143.3 102 72.5
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 4.5e-31 139.0 123 61.0
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 7.7e-31 138.3 79 88.6
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.9e-30 136.3 103 72.8
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 1.9e-29 133.7 108 62.0
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.9e-29 133.7 139 55.4
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 3.9e-27 125.9 134 52.2
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 8.2e-25 118.2 104 60.6
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 2.9e-22 109.8 64 85.9
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 6.5e-22 108.6 90 64.4
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.0e-19 99.8 95 60.0
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 5.7e-18 95.5 117 41.9
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.7e-17 94.0 83 62.7
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 8.2e-17 91.7 126 40.5
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.5e-10 70.9 50 76.0
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 2.6e-10 70.1 43 79.1
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 2.8e-09 66.6 51 60.8
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 1.4e-08 64.3 119 39.5
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.7e-07 60.1 40 72.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 4.5e-07 59.3 141 34.0
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 7.7e-07 58.5 44 65.9
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.7e-06 57.4 49 57.1
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.8e-06 56.2 38 71.1


User provided reference genes

Program Settings