Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1888.6 938 100.0
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1841.2 915 100.0
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1492.6 917 83.2
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1473.8 920 82.6
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1467.2 921 82.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1347.0 920 75.2
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1320.4 919 74.9
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1265.8 920 71.2
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1263.4 920 72.1
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1179.9 918 67.8
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1118.6 918 65.1
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 2.5e-282 975.7 924 57.6
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 3.8e-270 935.3 925 55.0
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 7.8e-268 927.5 921 53.5
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 1.7e-267 926.4 927 53.6
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 5.1e-267 924.9 929 54.0
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 2.4e-264 916.0 931 53.8
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 6.9e-264 914.4 928 53.9
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 2.6e-263 912.5 927 54.4
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 4.9e-262 908.3 1094 47.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.8e-259 899.8 925 53.0
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 6.2e-257 891.3 927 52.6
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.1e-256 890.6 928 53.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 2.0e-255 886.3 929 52.9
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 8.4e-254 880.9 910 53.5
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.4e-253 880.2 938 52.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 1.4e-253 880.2 926 52.6
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 5.1e-251 871.7 937 52.2
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 2.4e-248 862.8 937 52.5
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 2.7e-244 849.4 931 50.8
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 1.8e-243 846.7 911 52.0
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 2.1e-241 839.7 925 49.6
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 3.4e-239 832.4 920 50.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 7.2e-237 824.7 909 50.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 1.2e-236 823.9 955 48.8
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 3.0e-235 819.3 911 50.5
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.1e-234 817.4 930 51.4
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.5e-234 817.0 927 50.1
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.3e-234 815.8 930 51.3
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 7.4e-234 814.7 930 51.1
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 1.6e-233 813.5 920 49.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 2.2e-233 813.1 938 49.6
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 1.4e-227 793.9 909 48.6
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.0e-227 792.7 1035 45.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 5.1e-227 792.0 928 48.3
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 6.7e-227 791.6 919 48.3
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 1.1e-226 790.8 893 50.4
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 1.5e-223 780.4 900 48.9
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 3.4e-223 779.2 945 47.0
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 5.0e-222 775.4 923 47.7
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 8.2e-217 758.1 897 48.2
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.2e-215 754.2 951 47.2
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.3e-214 750.7 739 55.5
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.7e-214 750.4 905 47.3
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 2.9e-214 749.6 895 47.5
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 4.2e-213 745.7 916 46.5
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 5.2e-211 738.8 924 45.8
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 5.2e-211 738.8 907 49.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 2.6e-210 736.5 903 48.1
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 8.2e-209 731.5 911 46.3
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 4.1e-208 729.2 924 45.5
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 5.3e-208 728.8 924 45.0
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 7.0e-208 728.4 918 45.9
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 1.2e-207 727.6 906 46.4
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 7.7e-207 724.9 914 46.7
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 5.0e-206 722.2 897 45.7
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 2.5e-205 719.9 899 45.6
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 4.2e-205 719.2 899 45.6
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 4.2e-205 719.2 916 45.6
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 4.7e-204 715.7 902 45.1
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 3.0e-203 713.0 898 45.9
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 3.7e-201 706.1 921 44.5
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 2.4e-200 703.4 955 44.6
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 4.0e-195 686.0 923 43.7
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.4e-194 682.9 846 48.8
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 1.2e-186 657.9 688 52.0
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.6e-183 647.5 919 43.9
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 3.3e-181 639.8 920 42.6
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 4.3e-181 639.4 936 42.2
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.4e-178 629.4 907 42.2
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 5.4e-176 622.5 951 42.4
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 1.1e-168 598.2 904 41.3
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 4.3e-165 586.3 930 40.3
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 4.0e-131 473.4 644 48.3
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.3e-126 458.4 613 46.5
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 2.3e-126 457.6 909 33.4
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 4.5e-114 416.8 635 40.6
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.7e-108 397.1 502 45.6
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 8.5e-105 386.0 639 39.1
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.1e-99 367.1 529 43.1
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 8.8e-86 322.8 270 62.2
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 3.7e-84 317.4 250 64.4
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 7.0e-83 313.2 793 31.0
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.5e-80 305.4 253 63.2
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.6e-79 300.8 464 39.2
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 2.3e-78 298.1 249 62.7
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 2.0e-69 268.5 386 44.3
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 1.7e-68 265.4 234 61.5
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.6e-66 258.8 137 89.8
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-60 239.2 142 82.4
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.4e-46 192.6 392 32.9
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 1.2e-45 189.5 167 61.1
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.7e-39 167.5 465 31.0
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.7e-36 159.1 136 62.5
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 2.4e-35 155.2 85 90.6
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 2.4e-35 155.2 85 91.8
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 2.8e-31 141.7 188 41.5
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 6.9e-30 137.1 149 50.3
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-28 132.9 74 87.8
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 1.9e-27 129.0 666 24.8
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 2.1e-26 125.6 124 54.8
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.1e-24 119.8 113 46.9
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 6.2e-23 114.0 119 49.6
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 9.9e-21 106.7 70 80.0
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-19 102.4 70 78.6
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 9.3e-19 100.1 80 51.2
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 1.6e-18 99.4 64 81.2
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 7.9e-18 97.1 162 37.7
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-16 92.0 52 90.4
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-16 92.0 52 90.4
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-16 92.0 52 90.4
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 3.7e-15 88.2 48 91.7
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 1.1e-11 76.6 62 56.5
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 9.3e-11 73.6 169 33.7
Psat1g032760 Pisum sativum HOM05D003893 ORTHO05D005167 4.6e-10 71.2 75 56.0
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.8e-09 69.3 229 27.1
arahy.Tifrunner.gnm1.ann1.3X15P1 Arachis hypogaea HOM05D000826 ORTHO05D006448 7.4e-08 63.9 35 85.7


User provided reference genes

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