Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 6.7e-165 583.9 294 100.0
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 2.0e-145 519.2 287 90.6
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.3e-144 516.5 287 89.9
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 5.5e-143 511.1 287 89.2
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 3.7e-139 498.4 288 87.5
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 3.0e-133 478.8 288 84.4
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 1.2e-129 466.8 288 82.3
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 2.6e-129 465.7 288 82.6
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.0e-128 461.5 287 84.3
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 9.4e-127 457.2 288 80.6
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 9.4e-127 457.2 288 80.6
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 5.5e-111 404.8 283 72.1
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 1.6e-110 403.3 292 70.5
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 1.6e-110 403.3 293 70.6
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.7e-107 393.3 290 70.3
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.7e-107 393.3 290 70.3
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 3.7e-107 392.1 292 68.5
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 1.4e-106 390.2 288 69.4
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 1.8e-106 389.8 289 67.8
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 2.4e-106 389.4 289 68.2
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 4.1e-106 388.7 290 68.3
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 5.4e-106 388.3 282 69.9
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 7.0e-106 387.9 292 70.2
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 4.5e-105 385.2 286 68.9
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 3.8e-104 382.1 288 66.7
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 5.0e-104 381.7 289 68.2
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 5.0e-104 381.7 285 67.0
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 6.6e-104 381.3 289 68.2
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 1.1e-103 380.6 285 66.7
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.5e-103 380.2 280 69.6
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 1.5e-103 380.2 284 69.4
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 1.9e-103 379.8 287 66.9
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.9e-103 379.8 281 70.1
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.9e-103 379.8 288 66.7
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 3.3e-103 379.0 285 66.3
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 1.2e-102 377.1 285 66.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.2e-102 377.1 290 67.9
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.2e-102 377.1 290 67.9
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 2.8e-102 375.9 285 65.6
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 3.6e-102 375.6 285 66.3
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 3.6e-102 375.6 285 66.3
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 3.6e-102 375.6 281 69.4
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 4.7e-102 375.2 280 70.4
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 4.7e-102 375.2 292 66.4
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 8.0e-102 374.4 286 66.1
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 1.4e-101 373.6 286 65.4
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 2.3e-101 372.9 286 65.4
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 2.3e-101 372.9 281 69.4
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 4.0e-101 372.1 286 65.7
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 5.2e-101 371.7 281 68.0
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 1.2e-100 370.5 286 66.1
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 9.8e-100 367.5 292 67.8
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 1.7e-99 366.7 292 67.8
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 1.1e-98 364.0 285 65.3
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.8e-98 363.2 292 67.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 4.1e-98 362.1 280 66.8
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 9.2e-98 360.9 266 69.2
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 3.5e-97 359.0 284 65.5
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 1.5e-95 353.6 285 63.5
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 1.9e-95 353.2 284 63.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 2.5e-95 352.8 284 62.7
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 3.3e-95 352.4 284 63.4
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 4.3e-95 352.1 284 63.4
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 1.2e-94 350.5 284 65.1
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.6e-94 350.1 289 63.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 3.6e-94 349.0 283 63.3
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 4.7e-94 348.6 282 61.7
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 4.7e-94 348.6 280 63.9
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.4e-93 347.1 283 63.6
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 2.3e-93 346.3 282 64.2
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 2.6e-92 342.8 276 61.6
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.9e-91 338.6 285 60.4
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.9e-91 338.6 285 60.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 3.2e-90 335.9 277 59.9
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 4.1e-90 335.5 287 59.6
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.2e-90 334.3 261 65.9
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 1.2e-89 334.0 276 59.8
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.0e-89 333.2 269 64.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.2e-86 323.9 285 56.8
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 1.6e-86 323.6 292 56.8
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.3e-83 313.9 282 58.5
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.7e-83 313.5 294 59.5
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 5.1e-80 302.0 284 59.5
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 6.2e-78 295.0 179 82.1
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.5e-76 290.4 285 55.4
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 2.2e-75 286.6 282 57.1
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 6.6e-72 275.0 213 64.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 8.6e-72 274.6 284 56.0
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.5e-71 273.9 180 73.9
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 3.1e-69 266.2 305 49.2
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 5.2e-69 265.4 182 76.4
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 2.8e-62 243.0 334 43.4
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 3.5e-57 226.1 177 60.5
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.5e-52 210.7 108 95.4
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.5e-47 193.4 266 46.2
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 7.4e-47 191.8 112 83.9
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.3e-46 191.0 107 82.2
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 1.2e-44 184.5 178 56.7
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.8e-44 182.2 153 56.9
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 6.0e-41 172.2 174 48.3
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.7e-33 146.7 152 51.3
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 7.9e-33 145.2 152 44.7
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 5.7e-31 139.0 296 30.7
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.1e-21 106.7 55 92.7
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 1.1e-18 98.2 125 40.0
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.1e-15 88.2 102 47.1
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.5e-10 71.2 200 25.5
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.1e-09 67.4 83 44.6
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 6.3e-06 55.8 158 27.8


User provided reference genes

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