Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 6.2e-293 1010.0 485 100.0
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 6.2e-293 1010.0 485 100.0
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 2.3e-263 911.8 485 89.3
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 2.3e-255 885.2 491 87.0
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 2.4e-252 875.2 485 87.8
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 5.5e-249 864.0 488 85.5
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 7.9e-248 860.1 486 85.8
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 6.7e-247 857.1 486 85.8
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 3.0e-239 831.6 480 84.4
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 7.7e-235 817.0 496 80.6
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 1.2e-232 809.7 494 82.0
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 1.6e-232 809.3 499 81.0
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 3.6e-232 808.1 507 80.5
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 7.5e-230 800.4 499 80.2
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 9.1e-228 793.5 481 80.7
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 2.0e-219 765.8 477 77.8
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 2.7e-219 765.4 497 76.1
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 7.8e-219 763.8 499 74.9
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 1.7e-218 762.7 477 78.0
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 1.7e-218 762.7 426 83.8
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 5.0e-218 761.1 420 84.5
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 4.7e-216 754.6 485 75.9
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 8.0e-216 753.8 450 79.1
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 6.8e-215 750.7 478 75.7
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 5.7e-214 747.7 432 81.2
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 5.7e-214 747.7 438 79.5
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.3e-213 746.5 459 78.0
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.7e-213 746.1 474 75.5
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 4.1e-212 741.5 504 73.2
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 9.2e-212 740.3 475 77.3
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.2e-211 740.0 434 80.6
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 3.5e-211 738.4 518 71.6
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 4.6e-211 738.0 478 76.2
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 1.0e-210 736.9 424 81.1
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 5.0e-210 734.6 462 76.4
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 6.6e-210 734.2 454 76.9
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 2.5e-209 732.3 460 76.3
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 2.5e-209 732.3 461 77.2
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 5.6e-209 731.1 436 79.1
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 7.3e-209 730.7 472 75.2
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 9.5e-209 730.3 450 76.7
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 1.6e-208 729.6 457 76.6
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 1.6e-208 729.6 443 77.4
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 2.1e-208 729.2 427 80.1
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 2.8e-208 728.8 474 74.5
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 2.8e-208 728.8 475 74.3
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 8.0e-208 727.2 484 73.6
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 8.0e-208 727.2 437 78.9
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 8.0e-208 727.2 411 82.5
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 1.4e-207 726.5 427 80.1
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 2.3e-207 725.7 482 73.9
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 6.8e-207 724.2 445 78.0
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 8.9e-207 723.8 409 83.1
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 1.5e-206 723.0 423 80.1
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 1.5e-206 723.0 412 82.0
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 3.4e-206 721.8 427 79.2
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 7.5e-206 720.7 409 82.6
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 9.8e-206 720.3 411 83.0
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 2.9e-205 718.8 411 82.7
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 6.4e-205 717.6 436 78.4
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 6.4e-205 717.6 436 78.4
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 8.3e-205 717.2 414 82.1
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.1e-204 716.8 472 73.5
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 1.2e-203 713.4 411 82.0
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 2.0e-203 712.6 405 82.7
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 7.8e-203 710.7 397 84.4
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 7.8e-203 710.7 411 81.8
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 7.8e-203 710.7 411 81.8
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 1.3e-202 709.9 415 79.3
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 1.7e-202 709.5 440 76.8
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 5.0e-202 708.0 485 73.6
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.9e-201 706.1 446 78.0
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 5.6e-201 704.5 459 75.4
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 3.6e-200 701.8 485 71.5
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 8.1e-200 700.7 462 73.6
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 1.2e-198 696.8 460 75.0
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 2.6e-198 695.7 489 70.1
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 9.9e-198 693.7 470 71.9
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 5.4e-196 688.0 488 69.3
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 3.5e-195 685.3 459 72.1
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 1.3e-194 683.3 489 68.9
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 1.3e-194 683.3 419 75.2
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.3e-194 682.6 450 73.8
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 1.4e-191 673.3 426 76.5
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 2.3e-191 672.5 462 70.1
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 8.9e-191 670.6 412 76.5
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 1.5e-190 669.8 428 75.7
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 2.6e-190 669.1 449 73.5
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.4e-188 663.3 369 85.4
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 3.2e-188 662.1 454 68.7
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 1.7e-186 656.4 480 66.5
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 2.7e-179 632.5 443 68.4
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 5.3e-175 618.2 362 79.8
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 3.2e-172 609.0 593 56.8
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 3.9e-170 602.1 416 70.4
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 1.5e-169 600.1 445 67.2
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 2.4e-167 592.8 393 74.3
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 2.5e-161 572.8 406 68.7
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 9.6e-161 570.9 441 66.9
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 9.0e-159 564.3 424 66.5
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 2.8e-152 542.7 315 83.8
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 2.2e-141 506.5 424 59.7
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.4e-140 503.8 376 63.8
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 1.8e-138 496.9 380 62.6
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 5.1e-138 495.4 497 56.3
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 5.1e-138 495.4 262 87.0
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 5.1e-138 495.4 401 61.1
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.1e-135 485.7 272 83.8
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.5e-134 483.8 416 57.7
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 9.7e-129 464.5 273 81.0
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.6e-126 456.4 314 71.0
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 4.0e-122 442.6 251 81.3
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.2e-120 436.8 320 68.1
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 6.5e-117 425.2 436 50.9
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 4.4e-113 412.5 382 53.9
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 5.7e-105 385.6 236 78.8
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.4e-103 380.9 378 52.1
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 2.0e-97 360.5 529 39.7
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 7.0e-95 352.1 427 47.8
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.8e-90 337.4 255 67.5
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 3.1e-74 283.5 175 77.7
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 2.0e-73 280.8 190 70.0
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 5.1e-69 266.2 205 63.4
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.1e-55 221.9 140 76.4
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 1.8e-53 214.5 289 43.9
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 3.0e-53 213.8 345 37.4
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 5.1e-53 213.0 178 61.8
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 5.1e-53 213.0 184 60.3
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 2.9e-48 197.2 184 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 1.4e-47 194.9 297 38.4
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 7.1e-47 192.6 297 37.4
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 7.9e-46 189.1 112 77.7
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 8.2e-43 179.1 389 32.6
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 1.7e-40 171.4 401 30.7
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 4.9e-40 169.9 143 60.1
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 1.9e-39 167.9 349 33.8
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 1.3e-37 161.8 88 85.2
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.3e-32 145.2 74 83.8
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 3.9e-29 133.7 117 60.7
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 4.8e-27 126.7 113 60.2
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.0e-24 119.0 98 62.2
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 1.3e-24 118.6 259 35.9
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.6e-22 111.7 133 43.6
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 1.1e-18 99.0 99 53.5
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 3.6e-14 84.0 128 47.7
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 3.0e-13 80.9 108 46.3
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 5.9e-09 66.6 146 31.5
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 2.2e-08 64.7 38 81.6
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 1.9e-07 61.6 138 34.8
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 2.5e-07 61.2 31 80.6
C01p11650 Brassica napus HOM05D026831 ORTHO05D011195 3.2e-07 60.8 95 38.9
C02p10780 Brassica napus HOM05D002268 ORTHO05D042165 3.2e-07 60.8 138 34.1


User provided reference genes

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