Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 3.8e-99 364.8 177 100.0
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 3.8e-99 364.8 177 100.0
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 3.4e-79 298.5 184 82.6
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 7.5e-79 297.4 182 82.4
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 5.2e-64 248.1 182 72.0
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 6.8e-64 247.7 191 71.7
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 3.4e-63 245.4 168 76.8
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 5.4e-61 238.0 206 63.6
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 4.6e-60 235.0 186 68.8
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 1.7e-59 233.0 182 68.7
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.5e-58 229.9 190 66.3
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 1.5e-58 229.9 191 67.5
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.9e-58 229.6 186 68.3
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 5.6e-58 228.0 183 65.6
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 2.8e-57 225.7 190 62.1
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 3.6e-57 225.3 203 61.6
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.2e-57 224.6 191 64.9
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.4e-56 223.4 191 62.3
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.8e-56 223.0 189 64.6
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.8e-56 223.0 210 58.6
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.8e-56 223.0 191 64.4
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.8e-56 223.0 191 63.4
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 2.3e-56 222.6 179 65.4
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 3.1e-56 222.2 190 61.6
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 4.0e-56 221.9 183 65.0
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 6.8e-56 221.1 189 64.0
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 8.9e-56 220.7 194 63.4
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 8.9e-56 220.7 197 60.4
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.0e-55 219.5 194 62.9
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 2.6e-55 219.2 196 61.2
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 2.6e-55 219.2 188 60.1
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.6e-55 219.2 203 58.1
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 4.4e-55 218.4 186 62.9
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 5.8e-55 218.0 188 63.8
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 7.6e-55 217.6 150 72.7
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 9.9e-55 217.2 198 60.1
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 9.9e-55 217.2 191 60.2
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.7e-54 216.5 192 61.5
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.7e-54 216.5 198 60.6
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 2.2e-54 216.1 118 85.6
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 2.2e-54 216.1 185 61.6
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 2.2e-54 216.1 183 61.2
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 2.9e-54 215.7 113 88.5
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 3.7e-54 215.3 192 60.4
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 3.7e-54 215.3 178 63.5
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 4.9e-54 214.9 179 64.2
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 4.9e-54 214.9 179 64.2
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 6.4e-54 214.5 211 57.8
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 6.4e-54 214.5 144 70.8
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.1e-53 213.8 183 63.9
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.1e-53 213.8 118 85.6
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.4e-53 213.4 195 59.0
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.9e-53 213.0 199 59.3
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 2.4e-53 212.6 172 64.0
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 3.2e-53 212.2 184 62.0
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 4.1e-53 211.8 179 63.1
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 4.1e-53 211.8 121 83.5
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 5.4e-53 211.5 184 59.8
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 9.2e-53 210.7 120 83.3
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 9.2e-53 210.7 198 58.1
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.6e-52 209.9 174 63.8
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 1.6e-52 209.9 198 57.1
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.6e-52 209.9 124 79.8
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 2.1e-52 209.5 157 68.8
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 2.1e-52 209.5 124 81.5
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 2.1e-52 209.5 204 58.3
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 3.5e-52 208.8 154 68.8
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 3.5e-52 208.8 154 68.8
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 6.0e-52 208.0 181 63.5
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 6.0e-52 208.0 181 63.5
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 6.0e-52 208.0 181 63.5
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 7.8e-52 207.6 188 61.2
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.0e-51 207.2 153 66.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.0e-51 207.2 171 64.9
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.7e-51 206.5 201 57.7
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 2.3e-51 206.1 122 78.7
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 3.0e-51 205.7 153 67.3
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 5.1e-51 204.9 195 59.0
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 6.6e-51 204.5 126 78.6
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.1e-50 203.8 201 57.2
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.5e-50 203.4 118 79.7
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 2.5e-50 202.6 158 63.3
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 5.6e-50 201.4 195 59.5
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 1.2e-49 200.3 208 53.4
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 2.1e-49 199.5 193 57.5
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.8e-49 199.1 146 67.1
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 2.8e-49 199.1 194 57.7
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 3.6e-49 198.7 195 57.9
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 4.7e-49 198.4 182 59.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 6.2e-49 198.0 145 66.9
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 6.2e-49 198.0 187 59.4
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 6.2e-49 198.0 127 74.8
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.4e-48 196.8 127 74.0
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.4e-48 196.8 118 80.5
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 6.8e-48 194.5 181 59.1
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.5e-47 193.4 136 67.6
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 1.5e-47 193.4 113 77.0
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.0e-47 193.0 136 68.4
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 2.0e-47 193.0 182 58.2
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.0e-47 193.0 126 70.6
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 2.6e-47 192.6 113 77.0
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 4.4e-47 191.8 106 81.1
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 9.9e-47 190.7 113 75.2
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.9e-45 186.4 175 57.7
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.6e-44 183.3 149 61.1
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 7.8e-44 181.0 188 56.9
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 7.8e-44 181.0 128 68.0
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.7e-43 179.9 152 62.5
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 5.1e-43 178.3 185 53.0
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.5e-42 176.8 161 55.9
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 1.5e-42 176.8 116 70.7
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.9e-42 176.4 133 63.2
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.5e-42 176.0 139 60.4
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 6.2e-41 171.4 165 55.8
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.1e-40 170.6 129 65.1
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.8e-40 169.9 164 57.3
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 9.0e-40 167.5 113 67.3
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 2.6e-39 166.0 108 70.4
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.9e-37 159.8 126 59.5
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 3.0e-35 152.5 165 50.3
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 4.3e-34 148.7 133 57.9
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.6e-31 139.4 128 50.8
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 7.6e-31 137.9 121 52.9
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 5.6e-26 121.7 145 51.0
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 2.4e-24 116.3 108 52.8
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 3.4e-23 112.5 133 41.4
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.9e-13 80.1 83 47.0
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 2.2e-06 56.6 128 34.4


User provided reference genes

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