Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.2e-53 211.5 136 100.0
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.2e-53 211.5 136 100.0
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.1e-49 199.1 136 94.9
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 4.0e-48 194.9 136 92.6
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 5.8e-47 191.0 136 91.9
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.9e-45 186.0 136 89.0
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 7.4e-42 174.1 138 84.8
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 6.9e-40 167.5 138 83.3
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 9.0e-40 167.2 139 80.6
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 7.6e-39 164.1 139 80.6
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.2e-38 162.5 139 78.4
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 3.8e-38 161.8 139 79.1
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 6.0e-36 154.5 77 94.8
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.3e-35 153.3 139 77.0
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 4.5e-31 138.3 138 70.3
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 2.9e-30 135.6 131 71.0
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.1e-29 133.7 137 67.9
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 4.2e-29 131.7 131 71.0
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 4.2e-29 131.7 134 68.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 7.1e-29 131.0 135 68.9
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 2.1e-28 129.4 136 68.4
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 7.9e-28 127.5 138 53.6
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.3e-27 126.7 134 64.2
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.3e-27 126.7 137 65.7
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.3e-27 125.9 137 59.1
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 5.1e-27 124.8 131 64.1
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 5.1e-27 124.8 138 65.9
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 5.1e-27 124.8 138 65.9
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 6.7e-27 124.4 135 69.6
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 6.7e-27 124.4 140 49.3
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.1e-26 123.6 136 66.2
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.1e-26 123.6 135 67.4
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.5e-26 123.2 133 63.9
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.5e-26 123.2 135 68.9
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.9e-26 122.9 136 64.0
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 4.3e-26 121.7 138 61.6
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 5.7e-26 121.3 138 63.0
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 9.7e-26 120.6 131 64.9
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 1.3e-25 120.2 137 59.1
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.3e-25 120.2 134 64.9
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.6e-25 119.8 137 59.9
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 1.6e-25 119.8 135 55.6
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 2.2e-25 119.4 136 41.2
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.2e-25 119.4 137 56.9
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.2e-25 119.4 135 61.5
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.2e-25 119.4 135 61.5
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 2.2e-25 119.4 126 65.1
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 3.7e-25 118.6 132 61.4
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 3.7e-25 118.6 127 66.9
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 3.7e-25 118.6 126 64.3
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 4.8e-25 118.2 135 65.9
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 6.3e-25 117.9 131 64.9
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 6.3e-25 117.9 137 56.2
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 8.2e-25 117.5 126 64.3
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 8.2e-25 117.5 138 62.3
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.1e-24 117.1 137 58.4
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 1.4e-24 116.7 126 54.8
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.8e-24 116.3 121 70.2
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.8e-24 116.3 135 65.2
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.8e-24 116.3 134 61.9
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.8e-24 116.3 127 66.1
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.4e-24 115.9 137 59.1
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.1e-24 115.2 127 65.4
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 5.3e-24 114.8 127 63.0
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 6.9e-24 114.4 84 59.5
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.2e-23 113.6 120 69.2
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 1.2e-23 113.6 137 53.3
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.5e-23 113.2 132 62.1
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.5e-23 113.2 132 65.2
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 1.5e-23 113.2 123 68.3
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 2.0e-23 112.8 132 62.9
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 2.6e-23 112.5 126 60.3
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 2.6e-23 112.5 136 56.6
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.6e-23 112.5 129 41.1
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 3.4e-23 112.1 132 61.4
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.4e-23 112.1 131 60.3
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 2.2e-22 109.4 127 62.2
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.2e-22 109.4 127 61.4
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 2.9e-22 109.0 127 62.2
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 3.8e-22 108.6 118 71.2
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 6.5e-22 107.8 132 59.1
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.4e-21 106.7 77 59.7
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.4e-21 106.7 138 58.7
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.9e-21 106.3 126 63.5
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.9e-21 106.3 77 55.8
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 3.2e-21 105.5 136 56.6
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.2e-20 103.6 82 50.0
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.2e-20 103.6 139 36.7
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 2.1e-20 102.8 136 50.0
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 3.6e-20 102.1 132 61.4
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 6.1e-20 101.3 111 70.3
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 6.1e-20 101.3 137 57.7
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.0e-19 100.5 117 61.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 3.0e-19 99.0 140 37.1
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 5.7e-18 94.7 121 55.4
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 5.7e-18 94.7 123 59.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 5.7e-18 94.7 125 58.4
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 5.7e-18 94.7 125 58.4
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 7.4e-18 94.4 125 57.6
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.3e-17 93.6 125 57.6
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 3.7e-17 92.0 119 55.5
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 8.2e-17 90.9 128 54.7
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 8.2e-17 90.9 130 55.4
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.1e-16 90.5 125 56.8
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 6.9e-16 87.8 124 56.5
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 9.1e-16 87.4 138 41.3
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.0e-15 86.3 133 54.9
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.0e-15 86.3 133 54.9
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 2.6e-15 85.9 128 54.7
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.5e-15 85.1 109 40.4
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 5.9e-15 84.7 96 59.4
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 5.9e-15 84.7 101 70.3
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.3e-14 83.6 117 55.6
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.7e-14 83.2 94 72.3
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 1.4e-13 80.1 136 47.1
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 3.6e-12 75.5 116 49.1
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 9.7e-10 67.4 118 31.4
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 9.7e-10 67.4 118 31.4
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 9.7e-10 67.4 118 31.4
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.3e-09 67.0 118 31.4
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.3e-09 67.0 118 31.4
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 6.3e-09 64.7 118 30.5
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.8e-08 63.2 119 28.6
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 2.4e-08 62.8 57 45.6
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 4.1e-08 62.0 108 35.2
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 5.3e-08 61.6 128 30.5
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.2e-07 60.5 58 46.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 5.9e-07 58.2 94 46.8


User provided reference genes

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