Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30084_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.2e-169 599.7 298 100.0
Ca_23003_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 2.3e-88 329.7 165 100.0
Ca_14703_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.8e-48 197.2 290 45.2
Ca_12564_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 9.8e-39 164.9 380 34.5
Ca_11947_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 5.4e-29 132.5 180 46.7
TPR.G34719 Trifolium pratense HOM05D002954 ORTHO05D000385 1.9e-26 124.0 257 35.0
Psat0s797g0080 Pisum sativum HOM05D002954 ORTHO05D010767 1.8e-24 117.5 239 36.8
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 2.6e-23 113.6 254 33.5
TPR.G13772 Trifolium pratense HOM05D000107 ORTHO05D000062 9.8e-23 111.7 68 75.0
Ca_11754_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 1.3e-22 111.3 94 59.6
Ca_23803_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 2.9e-22 110.2 94 58.5
TPR.G34598 Trifolium pratense HOM05D000107 ORTHO05D000062 1.1e-21 108.2 68 72.1
Psat0s2164g0040 Pisum sativum HOM05D000107 ORTHO05D010767 3.2e-21 106.7 247 34.0
Ca_19703_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 7.0e-21 105.5 103 59.2
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 7.0e-21 105.5 300 32.0
Ca_02605_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 9.2e-21 105.1 90 61.1
Ca_26542_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 2.0e-20 104.0 106 56.6
Peaxi162Scf00818g00410 Petunia axillaris HOM05D002954 ORTHO05D003353 7.8e-20 102.1 289 29.4
arahy.Tifrunner.gnm1.ann1.2IZ9JW Arachis hypogaea HOM05D002954 ORTHO05D003353 1.3e-19 101.3 135 40.0
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 1.3e-19 101.3 135 40.0
Ca_02604_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 1.3e-19 101.3 94 55.3
Psat6g201280 Pisum sativum HOM05D000107 ORTHO05D000062 1.3e-19 101.3 143 42.0
Ca_14409_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.7e-19 100.9 109 55.0
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 1.7e-19 100.9 252 30.6
Psat6g199080 Pisum sativum HOM05D000107 ORTHO05D000062 3.0e-19 100.1 90 54.4
Ca_14618_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 5.0e-19 99.4 151 46.4
Psat4g189240 Pisum sativum HOM05D000107 ORTHO05D000062 6.6e-19 99.0 94 51.1
Ca_13669_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 8.6e-19 98.6 109 56.0
Ca_03865_v3 Cicer arietinum L. HOM05D002644 ORTHO05D010767 1.1e-18 98.2 101 58.4
Psat1g138720 Pisum sativum HOM05D000107 ORTHO05D000062 3.3e-18 96.7 143 40.6
Psat2g134520 Pisum sativum HOM05D002954 ORTHO05D003353 2.8e-17 93.6 237 30.4
arahy.Tifrunner.gnm1.ann1.C5M9FF Arachis hypogaea HOM05D002954 ORTHO05D000385 4.7e-17 92.8 259 27.0
Ca_03866_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.8e-16 90.9 143 44.8
Peaxi162Scf00109g00210 Petunia axillaris HOM05D002954 ORTHO05D003353 1.8e-16 90.9 136 43.4
Ca_20168_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 5.2e-16 89.4 81 60.5
Lj1g0012478 Lotus japonicus HOM05D000107 ORTHO05D000062 1.5e-15 87.8 68 55.9
Lj2g0004380 Lotus japonicus HOM05D005022 ORTHO05D002200 1.5e-15 87.8 135 42.2
Peaxi162Scf00624g00076 Petunia axillaris HOM05D002954 ORTHO05D003353 9.8e-15 85.1 256 27.7
Phvul.001G118100 Phaseolus vulgaris HOM05D002954 ORTHO05D000385 2.9e-14 83.6 186 33.3
PGSC0003DMG400011670 Solanum tuberosum HOM05D000107 ORTHO05D000062 2.4e-13 80.5 94 42.6
Lalb_Chr10g0094831 Lupinus albus HOM05D000107 ORTHO05D000062 3.2e-13 80.1 111 37.8
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 4.1e-13 79.7 220 27.7
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 4.1e-13 79.7 220 27.7
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 4.1e-13 79.7 215 29.8
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 7.1e-13 79.0 359 25.1
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 2.1e-12 77.4 132 43.2
Sopen09g020930 Solanum pennellii HOM05D000107 ORTHO05D000062 4.6e-12 76.3 94 42.6
Sopen11g015850 Solanum pennellii HOM05D000107 ORTHO05D000062 6.0e-12 75.9 69 47.8
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 7.8e-12 75.5 250 25.6
Solyc05g042015.1 Solanum lycopersicum HOM05D000107 ORTHO05D000062 1.0e-11 75.1 69 47.8
Sopen08g018280 Solanum pennellii HOM05D000107 ORTHO05D000695 1.0e-11 75.1 99 39.4
Psat2g020120 Pisum sativum HOM05D002954 ORTHO05D000062 1.3e-11 74.7 95 37.9
Solyc05g042155.1 Solanum lycopersicum HOM05D000107 ORTHO05D000062 1.7e-11 74.3 69 47.8
Ca_25752_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 2.3e-11 73.9 91 51.6
Peaxi162Scf00603g00522 Petunia axillaris HOM05D002954 ORTHO05D003353 2.3e-11 73.9 176 29.5
Psat5g178040 Pisum sativum HOM05D002954 ORTHO05D003353 2.3e-11 73.9 95 37.9
Os01g0768600 Oryza sativa ssp. japonica HOM05D000107 ORTHO05D000062 3.0e-11 73.6 94 41.5
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 5.1e-11 72.8 227 24.7
Ca_02603_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 6.6e-11 72.4 79 55.7
Os12g0544600 Oryza sativa ssp. japonica HOM05D000107 ORTHO05D000062 6.6e-11 72.4 94 41.5
Psat0s2381g0040 Pisum sativum HOM05D000107 ORTHO05D000062 6.6e-11 72.4 94 37.2
Psat0s472g0040 Pisum sativum HOM05D000107 ORTHO05D000062 6.6e-11 72.4 94 37.2
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 8.6e-11 72.0 209 27.8
Peaxi162Scf00006g00207 Petunia axillaris HOM05D002954 ORTHO05D003353 1.9e-10 70.9 201 30.3
Phvul.008G147600 Phaseolus vulgaris HOM05D002954 ORTHO05D000385 1.9e-10 70.9 128 35.9
Medtr8g040975 Medicago truncatula HOM05D009226 ORTHO05D010767 2.5e-10 70.5 83 45.8
TPR.G33013 Trifolium pratense HOM05D009226 ORTHO05D010767 2.5e-10 70.5 89 47.2
Rhsim04G0054900 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-10 70.1 69 43.5
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-10 70.1 69 43.5
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 5.6e-10 69.3 318 27.0
Medtr5g048720 Medicago truncatula HOM05D009226 ORTHO05D010767 5.6e-10 69.3 65 52.3
Medtr8g057120 Medicago truncatula HOM05D000107 ORTHO05D000062 5.6e-10 69.3 65 52.3
Solyc09g030515.1 Solanum lycopersicum HOM05D000107 ORTHO05D000062 5.6e-10 69.3 69 43.5
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 7.3e-10 68.9 135 37.8
Os02g0543900 Oryza sativa ssp. japonica HOM05D000107 ORTHO05D000062 7.3e-10 68.9 94 40.4
BraA05t22683Z Brassica rapa HOM05D008309 ORTHO05D000062 1.2e-09 68.2 68 44.1
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 1.2e-09 68.2 262 26.0
VMungo0720G1591 Vigna mungo HOM05D002954 ORTHO05D000385 1.2e-09 68.2 204 27.5
TPR.G15912 Trifolium pratense HOM05D009226 ORTHO05D010767 1.6e-09 67.8 84 47.6
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 3.6e-09 66.6 252 27.4
Peaxi162Scf00039g00318 Petunia axillaris HOM05D002954 ORTHO05D003353 3.6e-09 66.6 206 27.2
MBI15_g16946_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.7e-09 66.2 183 31.1
Psat0s1103g0040 Pisum sativum HOM05D009226 ORTHO05D010767 6.2e-09 65.9 143 35.7
Sopen04g016700 Solanum pennellii HOM05D000107 ORTHO05D000062 6.2e-09 65.9 94 41.5
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 8.1e-09 65.5 255 25.9
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 8.1e-09 65.5 195 27.2
Ca_19080_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 8.1e-09 65.5 87 49.4
TPR.G22956 Trifolium pratense HOM05D013784 ORTHO05D003353 8.1e-09 65.5 112 38.4
CSS0030837 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.1e-08 65.1 102 33.3
C01p31680 Brassica napus HOM05D008309 ORTHO05D000062 1.4e-08 64.7 132 30.3
BolC1t03108H Brassica oleracea HOM05D001350 ORTHO05D001091 1.4e-08 64.7 67 43.3
AUR62036790 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.4e-08 64.7 82 39.0
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 1.4e-08 64.7 165 32.7
CSS0009906 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.1e-08 63.5 102 32.4
CSS0018298 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.1e-08 63.5 102 32.4
CAN.G501.3 Capsicum annuum HOM05D000107 ORTHO05D000062 3.1e-08 63.5 94 35.1
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.1e-08 63.5 187 28.9
CSS0014451 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.0e-08 63.2 102 32.4
ECA236G1122 Erigeron canadensis HOM05D009609 ORTHO05D011572 4.0e-08 63.2 127 32.3
arahy.Tifrunner.gnm1.ann1.HJ32VC Arachis hypogaea HOM05D002954 ORTHO05D003353 5.2e-08 62.8 151 30.5
EL10Ac2g03191 Beta vulgaris HOM05D000107 ORTHO05D000062 5.2e-08 62.8 82 39.0
CSS0044341 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.2e-08 62.8 65 41.5
Ca_08360_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 5.2e-08 62.8 56 60.7
CSS0013777 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 6.8e-08 62.4 65 41.5
CSS0021554 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 6.8e-08 62.4 65 41.5
CSS0023291 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 6.8e-08 62.4 65 41.5
CSS0043289 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 6.8e-08 62.4 65 41.5
CSS0048713 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 6.8e-08 62.4 65 41.5
Phvul.011G145200 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 6.8e-08 62.4 176 28.4
Lalb_Chr21g0312571 Lupinus albus HOM05D009128 ORTHO05D011389 8.9e-08 62.0 268 26.1
Psat5g112160 Pisum sativum HOM05D002954 ORTHO05D010767 1.2e-07 61.6 198 26.3
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 1.2e-07 61.6 184 29.9
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 3.4e-07 60.1 179 28.5
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 4.4e-07 59.7 232 24.6
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.8e-07 59.3 225 27.1
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 7.6e-07 58.9 136 25.7
EL10Ac5g11722 Beta vulgaris HOM05D000107 ORTHO05D000062 9.9e-07 58.5 104 34.6
Medtr4g088560 Medicago truncatula HOM05D009226 ORTHO05D010767 9.9e-07 58.5 54 51.9
Nitab4.5_0002473g0090 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.9e-07 58.5 131 32.8
Nitab4.5_0006180g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.9e-07 58.5 134 29.9
Psat6g153520 Pisum sativum HOM05D009226 ORTHO05D010767 9.9e-07 58.5 69 55.1
Lj2g0015436 Lotus japonicus HOM05D002954 ORTHO05D010308 1.3e-06 58.2 185 27.6
Psat3g063200 Pisum sativum HOM05D002954 ORTHO05D003353 1.3e-06 58.2 99 35.4
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-06 57.8 223 27.4
Nitab4.5_0016483g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-06 57.8 145 29.7
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-06 57.8 302 24.2
FvH4_4g09791 Fragaria vesca HOM05D000107 ORTHO05D000062 2.2e-06 57.4 85 32.9
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 2.2e-06 57.4 233 23.6
TWI74G1678 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 2.2e-06 57.4 69 34.8
FvH4_6g21852 Fragaria vesca HOM05D000107 ORTHO05D000062 2.9e-06 57.0 85 32.9
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 2.9e-06 57.0 253 24.5
ECA232G4413 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.8e-06 56.6 92 34.8
FvH4_4g09832 Fragaria vesca HOM05D005012 ORTHO05D005886 3.8e-06 56.6 85 32.9
arahy.Tifrunner.gnm1.ann1.KMI722 Arachis hypogaea HOM05D009662 ORTHO05D003353 6.4e-06 55.8 100 32.0
FvH4_3g22002 Fragaria vesca HOM05D000107 ORTHO05D000062 6.4e-06 55.8 64 43.8
Psat6g163120 Pisum sativum HOM05D009226 ORTHO05D010767 6.4e-06 55.8 69 53.6
Psat3g100040 Pisum sativum HOM05D002954 ORTHO05D003353 8.4e-06 55.5 184 27.7


User provided reference genes

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