Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 3523.0 1799 100.0
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 3523.0 1799 100.0
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 3055.0 1818 87.5
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 3041.1 1815 87.4
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2991.1 1829 85.0
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2982.2 1829 84.9
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2977.6 1822 85.0
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2965.3 1818 85.6
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2962.6 1829 84.2
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2943.3 1833 84.2
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2878.6 1827 81.9
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2865.9 1816 83.4
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2845.8 1828 81.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2845.5 1826 81.1
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2560.0 1887 72.7
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2558.1 1849 73.8
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2513.8 1860 72.2
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2479.5 1837 72.1
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2478.4 1856 71.4
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2475.3 1844 71.0
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2469.9 1834 71.0
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2467.2 1840 71.6
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2451.0 1837 70.8
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2450.6 1829 72.0
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2446.8 1820 72.0
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2424.8 1840 70.0
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2421.4 1839 70.7
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2412.1 1844 69.5
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2412.1 1839 70.6
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2410.6 1834 70.6
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2406.7 1841 70.5
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2404.8 1850 69.5
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2394.8 1847 70.0
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2389.0 1831 70.2
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2387.5 1874 68.7
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2384.0 1823 70.0
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2381.7 1823 70.0
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2380.5 1823 70.0
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2370.1 1839 68.8
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2358.9 1850 69.5
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2356.3 1823 70.2
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2348.5 1847 67.4
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2344.3 1851 67.9
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2343.5 1854 69.0
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2339.7 1854 69.0
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2337.0 1846 68.3
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2317.0 1854 68.7
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2305.4 1845 67.5
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2305.0 1849 67.4
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2299.6 1899 65.9
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2296.2 1846 67.0
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2295.8 1850 67.9
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2275.0 1906 65.7
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2271.5 1831 67.0
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2253.8 1847 66.5
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2250.7 1839 66.3
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2245.7 1828 66.1
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2236.5 1842 65.3
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2228.8 1795 67.7
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2228.4 1844 65.3
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2213.7 1805 66.0
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2202.9 1826 64.8
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2171.7 1826 64.8
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2169.8 1843 64.5
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2162.9 1833 64.8
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2155.9 1844 64.0
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2150.6 1845 64.5
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2129.4 1829 63.8
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2124.0 1848 63.2
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2114.7 1834 63.0
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2105.1 1718 65.8
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2103.9 1819 63.3
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2103.9 1823 62.7
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2072.7 1821 63.1
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2048.1 1821 62.1
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2035.4 1814 62.1
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2017.7 1825 61.9
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2008.0 1811 62.0
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2007.6 1816 61.5
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2006.5 1819 61.5
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2004.2 1827 61.0
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1986.8 1821 60.7
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1964.5 1820 59.9
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1963.7 1330 77.7
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1959.9 1824 60.6
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1956.4 1339 77.2
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1935.2 1822 58.9
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1930.2 1750 61.7
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1926.8 1844 58.7
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1914.4 1819 60.3
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1892.9 1817 58.9
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1889.4 1807 59.1
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1887.8 1814 59.1
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1887.1 1814 59.1
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1877.8 1869 56.6
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1843.6 1817 57.6
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1761.5 1845 54.4
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1712.2 1371 67.5
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1712.2 1839 52.4
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1709.5 1194 75.8
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1622.8 1474 61.6
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1594.7 1692 54.4
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1564.7 1565 58.1
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1564.3 1787 52.4
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1520.4 1221 66.6
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1486.5 1359 62.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1431.0 1281 60.7
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1417.5 1780 48.7
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1340.5 1987 44.3
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1248.0 1086 63.7
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1209.9 996 65.6
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1207.2 1834 42.7
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1187.6 1342 53.2
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1166.8 1930 39.9
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1144.0 1978 38.8
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1143.6 1138 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1134.0 1937 39.6
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.9e-286 990.3 880 62.7
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.4e-251 873.2 1356 43.3
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 2.1e-237 827.4 1477 38.2
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 5.2e-236 822.8 598 71.4
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 9.9e-211 738.8 631 61.2
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.7e-210 738.0 549 73.8
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 7.3e-206 722.6 519 73.4
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 3.8e-202 710.3 480 77.1
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.1e-180 637.1 485 70.7
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 5.3e-180 636.7 475 69.3
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 5.7e-174 616.7 613 56.1
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 3.8e-162 577.4 381 76.1
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 3.6e-160 570.9 359 77.2
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.0e-154 552.7 472 63.3
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 5.5e-153 547.0 434 62.2
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 5.2e-151 540.4 337 81.6
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.0e-147 528.5 360 71.4
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 6.5e-146 523.5 402 71.4
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.4e-134 484.6 387 66.7
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.7e-125 455.7 323 70.0
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 3.3e-105 388.3 267 77.2
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 2.8e-104 385.2 254 79.1
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 2.0e-102 379.0 422 56.4
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.8e-79 302.8 292 60.6
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 1.5e-78 299.7 300 60.0
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 2.9e-77 295.4 299 59.9
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 5.2e-42 178.3 133 66.9
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.0e-34 154.1 131 65.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 3.8e-21 109.0 91 60.4
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 8.0e-19 101.3 550 23.6
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 2.3e-18 99.8 69 71.0
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 3.0e-18 99.4 73 67.1
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 6.8e-18 98.2 72 63.9
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 4.4e-17 95.5 86 60.5
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 5.7e-17 95.1 134 47.8
Psat2g039160 Pisum sativum HOM05D000412 ORTHO05D000429 2.7e-14 86.3 66 75.8
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 3.5e-14 85.9 213 27.7
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.7e-13 83.6 66 60.6
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 7.3e-12 78.2 69 56.5
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.8e-11 76.3 39 82.1
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.7e-11 75.5 34 94.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.7e-11 75.5 34 94.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.7e-11 75.5 34 94.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.7e-11 75.5 34 94.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 4.7e-11 75.5 34 94.1
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 1.0e-10 74.3 92 47.8
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 6.4e-08 65.1 184 31.0
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 5.4e-07 62.0 37 81.1
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 7.0e-07 61.6 214 26.6


User provided reference genes

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