Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 0.0e+00 1096.3 568 100.0
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 0.0e+00 1096.3 568 100.0
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 5.2e-214 748.0 760 57.2
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 4.2e-200 701.8 605 63.5
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 4.0e-198 695.3 754 56.0
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 4.7e-191 671.8 738 54.3
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 8.9e-190 667.5 684 55.7
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.3e-188 663.7 651 57.3
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 1.6e-186 656.8 673 56.5
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 3.4e-181 639.0 719 53.5
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 7.3e-168 594.7 702 51.4
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.1e-160 570.9 544 56.4
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.6e-159 567.0 546 56.0
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 4.2e-155 552.4 549 54.8
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 7.1e-155 551.6 591 54.0
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 9.2e-155 551.2 554 55.8
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 8.7e-153 544.7 549 54.5
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.2e-151 540.8 543 53.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.6e-151 540.4 557 55.1
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 4.7e-151 538.9 555 54.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 1.5e-149 533.9 581 52.8
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.6e-149 533.1 543 53.2
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.3e-148 530.8 569 52.7
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 3.0e-145 519.6 584 52.9
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.5e-144 517.3 562 52.7
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 2.0e-141 506.9 591 49.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 3.4e-141 506.1 520 54.4
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 2.9e-140 503.1 535 52.5
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 6.4e-140 501.9 551 52.5
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 7.1e-139 498.4 596 48.0
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.6e-138 497.3 557 50.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 2.1e-138 496.9 533 51.8
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 2.1e-138 496.9 592 50.0
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 3.0e-137 493.0 559 49.4
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 6.7e-137 491.9 551 52.8
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 5.3e-134 482.3 565 49.4
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.9e-134 481.9 599 48.4
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.0e-134 481.5 587 48.4
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.2e-133 481.1 587 48.2
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 5.8e-133 478.8 616 47.6
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 8.4e-132 474.9 561 50.1
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.1e-131 474.6 564 49.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 3.2e-131 473.0 568 48.4
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 5.5e-131 472.2 567 49.0
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.9e-130 468.4 586 48.1
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.3e-129 467.6 542 50.0
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 2.3e-129 466.8 573 47.1
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.0e-129 466.5 567 49.2
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 3.9e-129 466.1 596 46.3
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 9.6e-128 461.5 594 46.1
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 2.8e-127 459.9 617 46.4
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.7e-127 459.5 561 48.1
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 4.8e-127 459.1 620 45.3
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.2e-127 458.8 539 49.4
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.4e-126 457.6 607 45.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 5.3e-126 455.7 658 43.8
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.9e-126 455.3 573 47.1
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.0e-125 453.8 641 45.1
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 7.6e-125 451.8 587 45.8
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.9e-124 449.9 566 46.6
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 4.9e-124 449.1 615 44.4
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 6.5e-124 448.7 566 47.2
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 6.5e-124 448.7 545 47.5
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.9e-123 447.2 582 47.9
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.9e-123 447.2 558 46.8
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 3.5e-122 443.0 588 46.3
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 7.9e-122 441.8 587 45.8
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.0e-121 439.9 573 46.4
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 3.0e-121 439.9 614 45.6
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 3.0e-121 439.9 640 43.1
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 5.1e-121 439.1 545 48.3
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 8.7e-121 438.3 589 46.2
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 8.7e-121 438.3 563 45.3
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.9e-120 437.2 565 47.3
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.3e-120 436.4 555 46.5
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 5.3e-118 429.1 591 45.7
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 2.0e-117 427.2 552 46.4
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 4.5e-117 426.0 626 43.1
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 4.5e-117 426.0 549 46.4
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.7e-116 424.1 563 45.8
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.9e-116 423.3 716 40.4
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 2.7e-114 416.8 627 43.2
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 4.6e-114 416.0 520 46.3
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 5.1e-113 412.5 350 68.6
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 4.3e-112 409.5 723 38.5
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.1e-110 404.8 687 39.4
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-110 404.4 697 36.9
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 6.9e-110 402.1 697 36.9
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.7e-108 397.5 701 38.4
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.2e-106 391.3 437 51.3
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 4.7e-106 389.4 285 75.1
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.8e-105 387.5 576 43.2
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 5.1e-105 386.0 422 52.4
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 6.7e-105 385.6 642 38.5
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.1e-104 384.8 905 33.6
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 4.1e-102 376.3 679 37.3
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.0e-100 371.7 508 41.9
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.8e-97 360.9 546 41.0
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 1.6e-90 337.8 738 33.7
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.8e-89 334.3 452 45.8
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 6.8e-89 332.4 453 46.6
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.7e-84 317.8 263 61.2
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 8.0e-74 282.3 190 67.9
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.4e-73 281.6 234 59.8
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.8e-73 281.2 491 36.9
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-71 273.9 491 36.5
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 5.9e-69 266.2 603 32.3
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.6e-67 259.6 490 34.3
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.2e-64 251.9 566 32.5
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 6.4e-63 246.1 237 55.3
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 4.1e-62 243.4 716 27.7
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.9e-59 234.6 200 64.0
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 3.6e-58 230.3 196 60.7
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-48 198.7 462 31.8
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 3.4e-48 197.2 193 56.0
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.5e-45 187.2 139 69.1
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 9.6e-43 179.1 294 40.1
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 7.1e-38 162.9 195 43.1
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-30 138.3 191 44.0
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 7.1e-30 136.3 196 40.3
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 7.1e-30 136.3 196 40.3
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 3.5e-29 134.0 196 39.3
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 1.0e-28 132.5 242 36.0
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-25 121.7 160 44.4
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 6.4e-23 113.2 100 58.0
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 7.1e-22 109.8 319 28.8
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 6.0e-21 106.7 141 42.6
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-18 98.2 126 40.5
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.8e-17 95.1 80 60.0
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.0e-15 89.4 104 43.3
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.1e-14 85.9 61 62.3
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.4e-14 85.5 133 39.8
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 3.9e-12 77.4 107 41.1
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.5e-11 74.7 48 72.9
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 5.7e-11 73.6 49 65.3
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.3e-10 72.4 61 57.4
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 3.1e-09 67.8 174 28.2
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 9.0e-09 66.2 123 36.6
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 9.0e-09 66.2 82 36.6
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.2e-08 65.9 220 25.5
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.2e-08 65.9 103 38.8
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.0e-08 65.1 125 35.2
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.4e-08 64.3 228 27.6
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 7.6e-08 63.2 122 32.8
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.7e-07 62.0 122 33.6
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 5.0e-07 60.5 144 32.6
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.1e-06 59.3 133 31.6
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.5e-06 58.2 135 32.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.2e-06 57.8 126 30.2
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 4.2e-06 57.4 108 34.3
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 4.2e-06 57.4 57 49.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 5.5e-06 57.0 123 33.3
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 5.5e-06 57.0 123 30.9
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 7.1e-06 56.6 134 29.1
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 9.3e-06 56.2 74 39.2


User provided reference genes

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