Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.6e-36 154.1 80 100.0
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.5e-34 148.3 80 97.5
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.7e-33 144.4 80 95.0
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.8e-32 142.1 78 94.9
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 7.4e-26 120.2 80 82.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.1e-24 116.3 83 80.7
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.4e-24 115.2 83 80.7
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 4.1e-24 114.4 81 80.2
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 5.3e-24 114.0 83 79.5
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.5e-23 112.5 83 78.3
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 8.5e-22 106.7 78 76.9
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.9e-21 105.5 83 74.7
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.5e-21 104.0 84 75.0
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.2e-20 102.8 83 73.5
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.2e-20 102.8 83 73.5
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.6e-20 102.4 81 74.1
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.6e-20 102.4 88 70.5
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.7e-20 100.9 84 73.8
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.0e-19 99.8 84 73.8
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.4e-19 99.4 82 74.4
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.8e-19 99.0 89 69.7
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.3e-19 98.6 83 72.3
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 3.0e-19 98.2 83 71.1
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 8.8e-19 96.7 88 67.0
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.1e-18 96.3 85 71.8
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 2.0e-18 95.5 86 65.1
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 3.3e-18 94.7 88 61.4
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 3.3e-18 94.7 88 61.4
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 7.4e-18 93.6 83 66.3
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 9.7e-18 93.2 85 67.1
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 9.7e-18 93.2 85 65.9
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 1.7e-17 92.4 86 64.0
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 2.8e-17 91.7 83 65.1
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.8e-17 91.7 81 67.9
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 4.8e-17 90.9 86 66.3
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 6.3e-17 90.5 88 62.5
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.3e-17 90.5 88 62.5
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 8.2e-17 90.1 83 66.3
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 8.2e-17 90.1 81 66.7
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.1e-16 89.7 86 66.3
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.1e-16 89.7 88 62.5
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-16 89.4 81 66.7
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.4e-16 89.4 85 67.1
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.4e-16 89.4 82 65.9
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.4e-16 89.4 83 62.7
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.4e-16 89.4 83 62.7
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 2.4e-16 88.6 81 66.7
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.3e-16 87.4 88 62.5
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 5.3e-16 87.4 75 69.3
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 9.1e-16 86.7 86 64.0
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-15 86.3 88 60.2
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.2e-15 86.3 75 64.0
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-15 85.9 71 70.4
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.0e-15 85.5 83 66.3
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.0e-15 85.5 81 63.0
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 2.0e-15 85.5 81 63.0
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.6e-15 85.1 80 65.0
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.6e-15 85.1 75 64.0
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 3.5e-15 84.7 85 58.8
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.5e-15 84.7 82 64.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.5e-15 84.7 89 61.8
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.5e-15 84.7 88 61.4
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 4.5e-15 84.3 86 66.3
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.9e-15 84.0 81 61.7
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 7.7e-15 83.6 87 64.4
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.3e-14 82.8 87 59.8
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.3e-14 82.8 81 63.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.3e-14 82.8 89 61.8
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.2e-14 82.0 84 63.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 2.9e-14 81.6 88 59.1
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.9e-14 81.6 83 60.2
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 3.8e-14 81.3 92 60.9
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 3.8e-14 81.3 83 62.7
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 5.0e-14 80.9 86 59.3
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 8.5e-14 80.1 91 59.3
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.1e-13 79.7 84 63.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.1e-13 79.7 78 61.5
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.5e-13 79.3 83 63.9
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 1.5e-13 79.3 75 62.7
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.9e-13 79.0 85 62.4
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-13 79.0 64 71.9
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-13 79.0 64 71.9
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-13 79.0 64 71.9
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.5e-13 78.6 85 62.4
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.2e-13 78.2 87 59.8
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 3.2e-13 78.2 83 59.0
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 3.2e-13 78.2 89 60.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 3.2e-13 78.2 92 56.5
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 3.2e-13 78.2 88 60.2
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.2e-13 77.8 64 71.9
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 7.2e-13 77.0 83 60.2
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 7.2e-13 77.0 83 60.2
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 7.2e-13 77.0 83 60.2
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 9.4e-13 76.6 81 61.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 9.4e-13 76.6 82 61.0
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-12 76.3 83 60.2
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-12 76.3 83 60.2
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.2e-12 76.3 83 60.2
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-12 76.3 72 63.9
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 1.2e-12 76.3 83 62.7
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-12 76.3 91 53.8
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-12 76.3 91 52.7
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.6e-12 75.9 85 61.2
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.6e-12 75.9 84 58.3
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 1.6e-12 75.9 82 61.0
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.6e-12 75.9 81 54.3
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-12 75.5 81 60.5
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.7e-12 75.1 82 59.8
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.7e-12 75.1 82 59.8
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.7e-12 75.1 82 59.8
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.7e-12 75.1 82 59.8
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 2.7e-12 75.1 81 60.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.7e-12 75.1 88 51.1
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 3.6e-12 74.7 88 59.1
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.7e-12 74.3 89 58.4
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 6.1e-12 73.9 88 51.1
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 6.1e-12 73.9 80 60.0
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 8.0e-12 73.6 86 58.1
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.0e-11 73.2 82 61.0
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.0e-11 73.2 82 58.5
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.8e-11 72.4 82 59.8
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.8e-11 72.4 88 58.0
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.8e-11 72.4 85 56.5
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 2.3e-11 72.0 93 52.7
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.0e-11 71.2 80 57.5
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.0e-11 71.2 87 56.3
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.0e-11 71.2 87 56.3
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 4.0e-11 71.2 84 57.1
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.7e-11 70.5 91 54.9
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-10 69.7 82 57.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-10 69.7 88 50.0
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.5e-10 69.3 76 56.6
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.0e-10 68.9 82 57.3
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.4e-10 67.8 61 67.2
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.7e-10 67.4 75 54.7
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 5.7e-10 67.4 74 56.8
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.3e-09 66.2 75 54.7
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.7e-09 65.9 73 53.4
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.4e-08 62.0 78 52.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.1e-08 61.6 72 55.6
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.3e-08 60.8 74 56.8
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 5.3e-08 60.8 78 52.6
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 7.0e-08 60.5 82 50.0
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.6e-07 59.3 80 56.2
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 6.5e-06 53.9 61 63.9


User provided reference genes

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