Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 2.4e-220 768.5 374 100.0
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 2.4e-220 768.5 374 100.0
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 1.1e-175 620.2 433 71.8
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 1.6e-163 579.7 434 67.5
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.4e-162 576.6 443 66.1
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 5.7e-145 518.1 425 63.5
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 6.3e-136 488.0 427 60.0
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.6e-134 483.4 425 58.4
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 3.5e-134 482.3 434 58.5
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 7.7e-134 481.1 426 57.7
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 3.8e-133 478.8 425 57.4
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 1.2e-131 473.8 453 54.5
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.6e-131 473.4 425 56.0
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 8.0e-131 471.1 428 54.9
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 8.0e-131 471.1 441 54.0
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 8.0e-131 471.1 427 55.5
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 1.4e-130 470.3 433 55.2
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 1.8e-130 469.9 441 54.0
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 1.8e-130 469.9 427 55.5
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 2.3e-130 469.5 425 55.8
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 8.9e-130 467.6 419 56.1
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 5.7e-129 464.9 428 55.1
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 7.5e-129 464.5 437 53.5
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 6.3e-128 461.5 424 55.7
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.1e-127 460.7 424 55.7
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 1.8e-127 459.9 422 55.5
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 2.4e-127 459.5 427 53.2
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 4.1e-127 458.8 410 56.3
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 4.1e-127 458.8 427 55.0
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 9.2e-127 457.6 420 54.5
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 9.2e-127 457.6 411 56.0
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.6e-126 456.8 430 54.2
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 4.5e-126 455.3 425 54.6
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 1.3e-125 453.8 431 53.6
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 2.3e-125 453.0 420 55.2
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 5.6e-124 448.4 466 50.4
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 3.6e-123 445.7 426 52.6
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 1.4e-122 443.7 441 51.9
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 5.2e-122 441.8 432 53.5
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 1.5e-121 440.3 420 53.8
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 3.4e-121 439.1 428 53.0
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 7.5e-121 438.0 423 53.4
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 2.2e-120 436.4 481 48.2
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 2.9e-120 436.0 409 55.3
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 1.1e-119 434.1 434 52.1
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 1.6e-118 430.3 432 52.5
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 1.7e-117 426.8 491 46.6
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.3e-117 426.4 424 50.2
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 2.3e-117 426.4 426 50.9
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 2.5e-116 422.9 427 51.1
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 3.3e-116 422.5 423 50.1
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 3.3e-116 422.5 423 50.1
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 7.3e-116 421.4 423 50.1
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 9.5e-116 421.0 423 50.1
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 1.2e-115 420.6 414 52.4
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.6e-115 420.2 453 50.6
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 2.8e-115 419.5 422 50.2
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 2.8e-115 419.5 422 49.8
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 6.2e-115 418.3 423 49.9
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 6.2e-115 418.3 423 49.9
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 6.2e-115 418.3 422 49.5
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 1.4e-114 417.2 422 50.9
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 2.3e-114 416.4 429 50.3
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 8.9e-114 414.5 411 50.4
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 1.2e-113 414.1 385 55.6
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.5e-113 413.7 420 50.5
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 1.5e-113 413.7 426 51.2
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 7.5e-113 411.4 411 49.6
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 1.9e-111 406.8 423 48.9
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 7.8e-110 401.4 456 45.2
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 2.3e-109 399.8 428 48.6
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.5e-108 396.4 421 50.8
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 9.5e-108 394.4 421 50.8
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.1e-107 393.3 422 50.7
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 4.7e-107 392.1 372 53.8
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 4.1e-103 379.0 410 49.0
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 7.1e-103 378.3 417 46.5
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.7e-101 373.6 424 47.9
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.8e-99 366.3 409 47.2
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 3.5e-94 349.4 409 47.2
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 7.3e-92 341.7 348 52.6
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.1e-87 327.8 407 41.8
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.5e-84 316.6 429 38.7
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.8e-82 310.5 347 46.7
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 5.3e-82 308.9 465 41.3
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 9.0e-82 308.1 332 48.5
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 3.4e-81 306.2 345 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 1.3e-77 294.3 410 39.3
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 8.7e-77 291.6 448 35.9
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 2.1e-75 287.0 429 36.6
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 3.7e-75 286.2 515 34.6
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 1.7e-72 277.3 203 62.6
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 6.7e-69 265.4 202 60.9
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.5e-68 263.5 355 40.6
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 3.7e-51 206.5 147 63.3
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 5.9e-49 199.1 249 43.8
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.2e-46 191.4 159 54.1
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 1.4e-45 188.0 149 60.4
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 3.5e-41 173.3 145 53.8
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.8e-37 161.0 103 71.8
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 5.2e-37 159.5 138 50.7
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 3.3e-36 156.8 152 54.6
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 5.7e-36 156.0 152 54.6
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 5.7e-36 156.0 152 53.9
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-35 154.8 182 48.4
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 1.7e-35 154.5 144 52.1
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.4e-34 151.4 123 60.2
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.4e-34 151.4 118 61.9
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 5.3e-34 149.4 118 61.9
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 9.1e-34 148.7 101 66.3
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 1.2e-30 138.3 114 59.6
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 6.1e-30 136.0 164 48.2
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.4e-28 129.8 118 52.5
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 3.7e-27 126.7 75 72.0
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 1.8e-26 124.4 75 72.0
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 1.8e-26 124.4 59 91.5
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.1e-22 110.9 75 61.3
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.7e-22 109.8 81 56.8
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 8.0e-22 109.0 92 58.7
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 1.1e-18 98.6 61 67.2
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 1.1e-18 98.6 82 56.1
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.2e-17 95.1 119 44.5
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 4.9e-11 73.2 58 58.6
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 4.1e-10 70.1 74 44.6
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 7.8e-09 65.9 57 47.4
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 5.0e-08 63.2 58 48.3
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 5.0e-08 63.2 37 67.6
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 1.5e-07 61.6 91 35.2
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 8.0e-06 55.8 53 43.4


User provided reference genes

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