Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-55 219.5 116 100.0
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-55 219.5 116 100.0
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 5.3e-41 171.0 118 80.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.0e-39 166.8 111 80.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.2e-38 161.8 118 77.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 4.2e-38 161.4 112 78.6
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.7e-37 158.7 112 77.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.0e-36 156.8 112 76.8
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 9.7e-35 150.2 113 73.5
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 2.4e-33 145.6 113 71.7
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 9.1e-33 143.7 118 67.8
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.0e-28 128.6 118 64.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.1e-25 118.6 118 61.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.6e-24 116.3 119 58.8
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.6e-24 115.5 118 55.9
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.6e-24 115.5 118 55.9
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.0e-23 113.6 121 56.2
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.0e-23 113.6 118 58.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.9e-23 112.1 118 55.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 6.5e-23 110.9 117 56.4
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.5e-22 109.0 118 55.1
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 7.2e-22 107.5 119 60.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 3.6e-21 105.1 118 56.8
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-20 103.2 118 52.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.8e-20 102.8 119 57.1
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.8e-20 102.8 114 55.3
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.3e-20 102.4 118 50.0
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.0e-20 101.7 118 50.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.0e-19 99.4 118 50.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.6e-19 99.0 118 49.2
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 5.7e-19 97.8 115 53.9
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.3e-18 96.7 118 50.8
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.7e-18 96.3 124 48.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.2e-18 95.9 118 48.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.8e-18 94.7 110 51.8
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 4.8e-18 94.7 118 46.6
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.4e-17 92.4 119 52.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.4e-17 92.4 118 46.6
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 9.1e-17 90.5 119 47.1
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.0e-16 89.4 119 52.9
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.7e-16 89.0 118 50.0
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 4.5e-16 88.2 118 46.6
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 4.5e-16 88.2 118 45.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.3e-15 86.7 117 45.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.3e-15 86.7 118 46.6
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.9e-15 85.5 138 45.7
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 5.0e-15 84.7 116 50.9
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.5e-14 83.2 118 44.1
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.9e-14 82.8 117 48.7
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-14 82.8 117 48.7
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-14 81.6 118 42.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 7.2e-14 80.9 117 43.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 7.2e-14 80.9 117 44.4
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.2e-14 80.9 116 48.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.2e-14 80.9 121 44.6
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.4e-14 80.5 118 42.4
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-13 80.1 118 42.4
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.6e-13 79.7 121 43.8
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.1e-13 79.3 117 45.3
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-13 79.0 116 48.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-13 79.0 116 48.3
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.6e-13 78.6 118 41.5
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.1e-13 77.8 115 47.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.0e-13 77.4 121 43.0
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 8.0e-13 77.4 119 42.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 8.0e-13 77.4 119 42.0
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 8.0e-13 77.4 119 42.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-12 76.6 110 41.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.4e-12 76.6 118 41.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-12 76.3 110 41.8
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.8e-12 76.3 119 43.7
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.8e-12 74.3 110 40.9
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 6.8e-12 74.3 118 43.2
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 8.8e-12 73.9 123 43.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 8.8e-12 73.9 118 41.5
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 8.8e-12 73.9 118 41.5
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-11 73.6 110 43.6
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 1.2e-11 73.6 118 44.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.0e-11 72.8 118 43.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-11 72.8 110 42.7
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-11 72.8 110 42.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 3.4e-11 72.0 119 40.3
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.7e-11 71.2 119 40.3
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 7.5e-11 70.9 118 43.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 9.8e-11 70.5 127 37.0
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 9.8e-11 70.5 118 40.7
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.2e-10 69.3 125 40.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.8e-10 68.9 120 41.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.8e-10 68.9 125 40.0
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.7e-10 68.6 85 49.4
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.7e-10 68.6 125 39.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 3.7e-10 68.6 125 38.4
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.8e-10 68.2 125 38.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.4e-09 65.9 126 39.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 4.1e-09 65.1 116 41.4
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.4e-09 64.7 118 39.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.4e-09 64.7 119 41.2
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 9.1e-09 63.9 118 35.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.6e-08 63.2 118 39.0
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 2.0e-08 62.8 115 37.4
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 4.5e-08 61.6 80 55.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.5e-08 61.6 117 37.6
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 7.7e-08 60.8 118 38.1
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 7.7e-08 60.8 118 38.1
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.0e-07 60.5 118 33.9
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.3e-07 60.1 120 39.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.7e-07 59.7 124 33.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.3e-07 59.3 111 42.3
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.3e-07 59.3 66 56.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.8e-07 58.5 117 37.6
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.6e-07 57.8 111 37.8
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 8.6e-07 57.4 107 38.3
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 8.6e-07 57.4 46 63.0
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-06 57.0 116 36.2
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.1e-06 57.0 118 35.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.1e-06 57.0 118 40.7
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.5e-06 55.8 118 36.4
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.5e-06 55.8 118 35.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.5e-06 55.8 116 33.6
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.3e-06 55.5 117 38.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 4.2e-06 55.1 113 36.3
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.2e-06 55.1 113 36.3
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 7.2e-06 54.3 114 38.6


User provided reference genes

Program Settings