Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29384_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 0.0e+00 1086.2 518 100.0
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 1.1e-72 278.5 552 33.3
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 4.4e-71 273.1 528 33.0
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 7.6e-71 272.3 505 33.7
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 9.9e-71 271.9 468 37.6
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 3.8e-70 270.0 553 33.3
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 8.4e-70 268.9 450 37.1
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 1.4e-69 268.1 554 32.7
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 1.4e-69 268.1 551 32.8
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 4.1e-69 266.5 533 33.2
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 4.1e-69 266.5 543 32.2
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 5.4e-69 266.2 555 32.8
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 7.1e-69 265.8 442 36.9
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 7.1e-69 265.8 442 36.9
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 9.2e-69 265.4 419 37.9
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 9.2e-69 265.4 560 32.1
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.1e-68 264.2 447 36.9
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.1e-68 264.2 447 36.9
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 4.6e-68 263.1 416 37.5
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 4.6e-68 263.1 550 32.4
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 4.6e-68 263.1 551 33.0
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 6.0e-68 262.7 495 34.5
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 6.0e-68 262.7 553 32.7
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 7.8e-68 262.3 539 34.3
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 7.8e-68 262.3 482 35.7
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.0e-67 261.9 443 37.0
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.3e-67 261.5 534 33.0
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 1.7e-67 261.2 561 32.6
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 1.7e-67 261.2 444 36.9
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 2.3e-67 260.8 553 31.8
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 3.0e-67 260.4 416 37.0
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 3.0e-67 260.4 419 37.2
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 3.9e-67 260.0 437 35.5
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 5.1e-67 259.6 452 34.7
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 5.1e-67 259.6 567 32.6
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 5.1e-67 259.6 546 32.1
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 6.6e-67 259.2 547 32.7
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 8.7e-67 258.8 427 35.8
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 8.7e-67 258.8 469 35.2
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 8.7e-67 258.8 470 35.1
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 8.7e-67 258.8 552 32.1
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 8.7e-67 258.8 547 32.7
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 1.1e-66 258.5 453 35.1
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 1.5e-66 258.1 493 33.9
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 1.9e-66 257.7 442 35.5
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 2.5e-66 257.3 522 33.1
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 2.5e-66 257.3 450 35.3
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 3.3e-66 256.9 422 37.0
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 3.3e-66 256.9 554 31.6
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 3.3e-66 256.9 543 31.3
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 3.3e-66 256.9 457 35.2
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 3.3e-66 256.9 437 37.5
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 4.3e-66 256.5 440 35.9
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 4.3e-66 256.5 557 32.0
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 5.6e-66 256.1 549 32.6
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 7.3e-66 255.8 443 35.4
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 7.3e-66 255.8 444 34.2
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 9.6e-66 255.4 443 34.8
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 9.6e-66 255.4 449 34.7
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 9.6e-66 255.4 488 33.6
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.2e-65 255.0 552 31.3
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.2e-65 255.0 458 34.5
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 2.1e-65 254.2 563 30.9
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 4.7e-65 253.1 421 36.8
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 4.7e-65 253.1 421 36.6
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 1.4e-64 251.5 449 35.4
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 1.4e-64 251.5 584 30.5
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 1.4e-64 251.5 532 32.3
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 1.8e-64 251.1 440 35.7
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.4e-64 250.8 432 34.7
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 2.4e-64 250.8 553 32.4
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 2.4e-64 250.8 453 34.2
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 3.1e-64 250.4 430 35.1
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 4.0e-64 250.0 481 32.4
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 4.0e-64 250.0 556 30.9
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 5.2e-64 249.6 553 31.1
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 6.9e-64 249.2 444 34.7
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 1.2e-63 248.4 422 36.0
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 1.2e-63 248.4 587 32.9
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 2.0e-63 247.7 442 35.3
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.6e-63 247.3 510 32.9
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 3.4e-63 246.9 491 33.2
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 3.4e-63 246.9 442 33.9
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 4.4e-63 246.5 491 33.2
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 4.4e-63 246.5 452 34.1
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 4.4e-63 246.5 455 33.4
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 5.8e-63 246.1 491 33.2
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 5.8e-63 246.1 523 33.7
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 7.6e-63 245.7 426 34.7
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 7.6e-63 245.7 426 34.7
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 1.3e-62 245.0 427 35.1
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 2.2e-62 244.2 426 34.3
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 2.2e-62 244.2 426 35.0
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 2.2e-62 244.2 426 35.0
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.9e-62 243.8 522 33.0
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 2.9e-62 243.8 490 32.2
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 3.8e-62 243.4 420 34.8
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 3.8e-62 243.4 428 34.3
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 3.8e-62 243.4 443 33.6
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 4.9e-62 243.0 426 34.3
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 4.9e-62 243.0 453 34.2
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 8.4e-62 242.3 443 34.8
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 8.4e-62 242.3 453 34.0
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 1.1e-61 241.9 443 34.5
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.4e-61 241.5 458 34.3
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 1.9e-61 241.1 427 34.4
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 2.4e-61 240.7 429 35.7
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 3.2e-61 240.4 488 33.4
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 4.2e-61 240.0 426 34.5
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 4.2e-61 240.0 442 34.8
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 5.4e-61 239.6 429 35.9
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 5.4e-61 239.6 426 34.0
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 1.2e-60 238.4 420 34.5
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.7e-60 237.3 423 33.6
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 3.5e-60 236.9 473 32.6
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 3.0e-59 233.8 436 34.2
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 3.9e-59 233.4 454 33.9
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 6.6e-59 232.6 440 34.3
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 6.6e-59 232.6 579 29.9
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 8.7e-59 232.3 524 32.3
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 8.7e-59 232.3 566 30.0
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 7.3e-58 229.2 504 31.0
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 9.6e-58 228.8 466 34.1
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 1.3e-57 228.4 448 33.3
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 1.3e-57 228.4 405 34.8
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 8.1e-57 225.7 405 35.1
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 4.5e-55 219.9 419 33.4
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.3e-54 218.4 421 32.3
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.8e-54 216.9 582 28.4
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 8.4e-54 215.7 586 28.7
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 5.4e-53 213.0 633 30.0
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 9.3e-53 212.2 504 29.0
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 9.3e-53 212.2 373 34.9
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 2.7e-52 210.7 460 31.3
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.0e-51 208.8 586 28.0
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 1.0e-51 208.8 518 28.6
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.8e-51 208.0 379 34.6
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 3.0e-51 207.2 374 36.1
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 3.9e-51 206.8 425 31.8
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 8.7e-51 205.7 445 32.1
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 7.4e-50 202.6 638 28.7
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.8e-49 200.7 507 29.4
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 3.7e-49 200.3 376 33.5
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.1e-48 198.7 387 33.6
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 2.9e-46 190.7 736 24.7
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.0e-43 182.2 336 33.3
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 3.3e-42 177.2 395 31.9
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.6e-41 174.9 289 36.0
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 2.1e-41 174.5 511 28.8
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 1.1e-40 172.2 335 34.9
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 4.0e-40 170.2 271 36.9
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 5.3e-40 169.9 346 32.1
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 1.2e-39 168.7 270 36.3
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 2.0e-39 167.9 257 37.4
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 4.5e-39 166.8 354 33.6
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 8.4e-38 162.5 542 25.5
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 1.1e-37 162.2 278 35.6
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 3.2e-37 160.6 284 35.2
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 1.6e-33 148.3 256 34.8
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 6.9e-32 142.9 327 30.9
SHI06939 Sapria himalayana HOM05D003472 ORTHO05D004200 3.2e-29 134.0 278 32.0
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.3e-27 127.9 515 24.9
SEGI_13496 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.6e-23 114.4 219 31.1
SEGI_01865 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 6.5e-22 109.8 241 29.9
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 1.4e-21 108.6 239 31.4
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 5.7e-18 96.7 342 28.4
Potri.006G068300 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.1e-16 92.4 108 43.5
C09p32980 Brassica napus HOM05D003472 ORTHO05D004200 1.0e-14 85.9 236 27.5
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 2.5e-13 81.3 115 40.0
BcaC04g21340 Brassica carinata HOM05D003472 ORTHO05D004200 3.2e-13 80.9 236 27.1
SEGI_06448 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 4.2e-13 80.5 141 35.5
Aa31LG6G7240 Aethionema arabicum HOM05D003472 ORTHO05D004200 7.2e-13 79.7 107 39.3
BolC9t56133H Brassica oleracea HOM05D003472 ORTHO05D004200 1.1e-08 65.9 174 27.0
Lalb_Chr05g0223891 Lupinus albus HOM05D003472 ORTHO05D004200 7.0e-08 63.2 95 38.9


User provided reference genes

Program Settings