Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 0.0e+00 2158.3 1079 100.0
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 8.4e-64 250.0 361 41.6
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.4e-63 248.4 358 42.7
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 2.4e-63 248.4 343 43.4
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 5.4e-63 247.3 344 41.3
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 5.4e-63 247.3 345 42.6
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 7.1e-63 246.9 358 41.6
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 7.1e-63 246.9 359 41.5
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 1.2e-62 246.1 357 41.7
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.2e-62 246.1 357 41.7
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.6e-62 245.7 334 42.5
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.1e-62 245.4 358 42.2
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.1e-62 245.4 357 41.7
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 2.7e-62 245.0 358 41.6
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.7e-62 245.0 358 41.6
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.7e-62 245.0 358 41.6
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 2.7e-62 245.0 357 40.1
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 4.6e-62 244.2 357 41.7
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 4.6e-62 244.2 358 41.3
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 6.0e-62 243.8 358 40.8
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 7.8e-62 243.4 358 41.9
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 7.8e-62 243.4 358 41.3
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 1.0e-61 243.0 357 40.9
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.0e-61 243.0 361 40.4
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 1.0e-61 243.0 358 41.9
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 1.3e-61 242.7 358 42.2
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 3.0e-61 241.5 357 41.7
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 3.9e-61 241.1 350 41.4
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 3.9e-61 241.1 358 41.3
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 5.1e-61 240.7 342 40.6
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 5.1e-61 240.7 358 41.6
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 5.1e-61 240.7 358 41.9
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 5.1e-61 240.7 357 40.9
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 6.6e-61 240.4 358 41.9
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 6.6e-61 240.4 358 41.1
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 8.7e-61 240.0 358 41.3
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 8.7e-61 240.0 358 41.1
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 1.1e-60 239.6 351 40.5
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.1e-60 239.6 361 39.6
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.1e-60 239.6 361 40.7
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 1.1e-60 239.6 360 40.3
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 1.5e-60 239.2 358 40.5
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.5e-60 239.2 358 41.1
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 1.9e-60 238.8 360 39.4
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.9e-60 238.8 361 41.0
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.9e-60 238.8 357 40.9
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 2.5e-60 238.4 354 41.0
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 2.5e-60 238.4 354 41.0
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 2.5e-60 238.4 361 41.0
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 3.3e-60 238.0 361 40.4
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.3e-60 238.0 361 40.7
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 4.3e-60 237.7 358 39.7
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 4.3e-60 237.7 362 40.6
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 5.6e-60 237.3 361 40.7
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 7.3e-60 236.9 361 40.2
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 7.3e-60 236.9 358 40.2
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 7.3e-60 236.9 361 40.2
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 7.3e-60 236.9 361 40.7
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 7.3e-60 236.9 361 40.2
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.3e-59 236.1 360 40.6
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 1.3e-59 236.1 357 40.1
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 1.6e-59 235.7 357 40.6
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 1.6e-59 235.7 358 41.1
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 2.1e-59 235.3 358 39.9
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 2.1e-59 235.3 358 39.9
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 2.1e-59 235.3 357 40.9
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 2.1e-59 235.3 361 39.9
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.1e-59 235.3 359 40.1
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 2.8e-59 235.0 358 39.1
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.8e-59 235.0 357 40.6
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.8e-59 235.0 352 40.6
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 3.6e-59 234.6 358 40.5
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 3.6e-59 234.6 357 40.1
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 3.6e-59 234.6 359 40.9
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 3.6e-59 234.6 361 40.2
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 4.8e-59 234.2 359 40.1
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 4.8e-59 234.2 360 39.4
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 6.2e-59 233.8 358 41.1
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 6.2e-59 233.8 358 39.4
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 1.1e-58 233.0 358 39.7
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.1e-58 233.0 357 40.1
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 1.4e-58 232.6 358 40.5
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.8e-58 232.3 367 39.2
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.8e-58 232.3 315 40.3
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 2.4e-58 231.9 361 41.0
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 2.4e-58 231.9 358 40.2
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 2.4e-58 231.9 357 39.8
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 2.4e-58 231.9 357 39.8
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 3.1e-58 231.5 361 39.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 4.0e-58 231.1 359 40.4
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 5.3e-58 230.7 361 41.3
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 5.3e-58 230.7 311 44.1
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 5.3e-58 230.7 358 39.7
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 6.9e-58 230.3 361 40.7
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 9.0e-58 229.9 361 40.4
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 9.0e-58 229.9 357 40.3
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 9.0e-58 229.9 357 39.8
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 1.2e-57 229.6 361 41.0
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 1.2e-57 229.6 361 41.0
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.2e-57 229.6 361 40.7
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.2e-57 229.6 373 36.5
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.5e-57 229.2 361 41.0
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 1.5e-57 229.2 361 40.2
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 1.5e-57 229.2 312 43.3
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 2.0e-57 228.8 361 40.4
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 2.0e-57 228.8 361 40.4
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 3.4e-57 228.0 354 40.7
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 3.4e-57 228.0 354 40.7
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 3.4e-57 228.0 356 38.8
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 3.4e-57 228.0 357 39.2
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 4.4e-57 227.6 355 40.3
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 7.6e-57 226.9 361 40.2
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 7.6e-57 226.9 361 39.6
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 2.9e-56 224.9 342 40.4
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 7.1e-55 220.3 400 35.5
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 2.7e-54 218.4 384 36.2
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 1.7e-53 215.7 338 39.9
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 3.9e-53 214.5 410 35.4
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 2.8e-51 208.4 363 38.3
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 3.6e-51 208.0 288 43.4
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 6.2e-51 207.2 320 39.4
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 4.2e-47 194.5 447 32.4
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 9.3e-47 193.4 306 38.6
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 1.1e-44 186.4 362 34.8
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 3.3e-44 184.9 307 39.4
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.8e-43 181.8 379 33.8
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 3.0e-37 161.8 255 40.8
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 5.1e-37 161.0 253 39.1
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 9.6e-36 156.8 334 32.0
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.1e-34 153.3 335 32.2
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 6.9e-26 124.0 295 30.2
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.5e-25 122.9 349 28.9
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 1.1e-23 116.7 174 40.2
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.2e-19 102.4 159 39.6
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 8.2e-19 100.5 180 37.2
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 5.9e-17 94.4 95 53.7
Ca_29154_v3 Cicer arietinum L. HOM05D013100 ORTHO05D147770 1.7e-16 92.8 232 28.0
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 8.8e-13 80.5 105 42.9
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 1.4e-10 73.2 148 30.4
PRCOL_00002484 Prasinoderma coloniale HOM05D060773 ORTHO05D049152 1.8e-10 72.8 125 36.0
CBR_g47101 Chara braunii HOM05D061628 ORTHO05D043951 1.3e-08 66.6 97 37.1
CBR_g54340 Chara braunii HOM05D013100 ORTHO05D016517 1.3e-08 66.6 98 33.7
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.5e-07 62.4 256 27.7
SEGI_38091 Sequoiadendron giganteum HOM05D013100 ORTHO05D016517 4.2e-07 61.6 129 33.3


User provided reference genes

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