Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28944_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 6.7e-108 394.0 201 100.0
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 5.2e-28 128.6 189 40.7
Cfa023965 Carpinus fangiana HOM05D003546 ORTHO05D005667 2.3e-23 113.2 198 37.4
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 5.3e-20 102.1 200 32.0
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 9.0e-20 101.3 200 34.0
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 2.0e-19 100.1 200 32.0
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 4.4e-19 99.0 200 32.5
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 5.8e-19 98.6 200 33.0
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 5.8e-19 98.6 200 31.5
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 7.6e-19 98.2 200 33.0
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 9.9e-19 97.8 201 32.8
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 9.9e-19 97.8 199 31.7
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 9.9e-19 97.8 200 32.0
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 1.3e-18 97.4 199 31.2
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.3e-18 97.4 199 31.2
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.3e-18 97.4 199 31.2
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.3e-18 97.4 200 31.0
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 1.7e-18 97.1 200 30.0
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 2.2e-18 96.7 200 31.5
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 2.2e-18 96.7 200 31.5
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 2.2e-18 96.7 200 30.5
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 2.2e-18 96.7 198 31.8
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 2.9e-18 96.3 202 32.2
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 2.9e-18 96.3 200 30.5
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 2.9e-18 96.3 200 31.5
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 2.9e-18 96.3 200 30.5
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 3.8e-18 95.9 200 30.5
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 3.8e-18 95.9 197 33.5
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 4.9e-18 95.5 200 31.5
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 4.9e-18 95.5 200 32.0
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 4.9e-18 95.5 200 32.0
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 4.9e-18 95.5 200 30.0
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 4.9e-18 95.5 200 31.0
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 6.4e-18 95.1 200 31.5
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 6.4e-18 95.1 200 31.5
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 6.4e-18 95.1 199 30.2
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 6.4e-18 95.1 200 30.5
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 8.4e-18 94.7 200 31.0
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 8.4e-18 94.7 197 29.9
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 8.4e-18 94.7 200 31.0
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 1.1e-17 94.4 204 32.4
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 1.1e-17 94.4 200 31.0
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 1.1e-17 94.4 200 31.5
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 1.4e-17 94.0 200 30.5
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.9e-17 93.6 200 31.0
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 1.9e-17 93.6 201 31.8
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 1.9e-17 93.6 200 30.5
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 1.9e-17 93.6 200 30.0
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 2.4e-17 93.2 199 31.2
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 2.4e-17 93.2 201 31.3
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 3.2e-17 92.8 201 31.3
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 3.2e-17 92.8 204 32.4
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 4.2e-17 92.4 200 30.0
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 4.2e-17 92.4 201 31.3
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 4.2e-17 92.4 200 30.5
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 5.4e-17 92.0 207 30.4
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 5.4e-17 92.0 200 31.0
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 5.4e-17 92.0 201 31.8
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 5.4e-17 92.0 204 31.9
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 5.4e-17 92.0 205 31.7
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 5.4e-17 92.0 200 31.0
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 5.4e-17 92.0 201 32.3
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 7.1e-17 91.7 200 31.0
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 9.3e-17 91.3 218 31.2
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 1.6e-16 90.5 200 31.0
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 1.6e-16 90.5 200 29.5
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 1.6e-16 90.5 200 30.5
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 2.1e-16 90.1 201 31.3
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 2.1e-16 90.1 201 30.3
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 2.7e-16 89.7 201 30.3
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 3.5e-16 89.4 203 33.0
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 4.6e-16 89.0 202 30.7
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 6.0e-16 88.6 201 30.8
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 6.0e-16 88.6 200 30.5
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 7.8e-16 88.2 202 30.2
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 7.8e-16 88.2 200 31.5
MCO13G515 Micromonas commoda HOM05D003546 ORTHO05D005667 7.8e-16 88.2 189 31.2
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 7.8e-16 88.2 201 31.3
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 1.0e-15 87.8 201 30.8
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 1.0e-15 87.8 200 30.5
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.7e-15 87.0 201 30.3
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 1.7e-15 87.0 200 28.0
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 1.7e-15 87.0 201 30.8
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 1.7e-15 87.0 202 33.7
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 2.3e-15 86.7 201 28.9
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 2.3e-15 86.7 200 29.0
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 2.3e-15 86.7 200 30.0
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 3.0e-15 86.3 200 29.5
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 3.0e-15 86.3 204 29.9
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 3.9e-15 85.9 209 30.6
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 5.1e-15 85.5 201 30.3
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 8.7e-15 84.7 204 29.9
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 1.1e-14 84.3 202 32.7
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 1.5e-14 84.0 204 29.9
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 2.5e-14 83.2 201 34.8
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 2.5e-14 83.2 202 30.2
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 4.3e-14 82.4 204 29.4
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 4.3e-14 82.4 204 29.4
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 1.3e-13 80.9 202 30.2
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 1.3e-13 80.9 204 29.4
PRCOL_00001162 Prasinoderma coloniale HOM05D003546 ORTHO05D005667 1.3e-13 80.9 196 32.7
SMO163G0088 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 2.1e-13 80.1 216 29.6
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 6.2e-13 78.6 185 30.8
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 1.1e-12 77.8 206 31.6
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 2.4e-12 76.6 200 28.5
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 2.4e-12 76.6 229 28.8
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 3.1e-12 76.3 140 32.9
MCO15G239 Micromonas commoda HOM05D003546 ORTHO05D005667 3.1e-12 76.3 207 28.5
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 1.5e-11 73.9 160 32.5
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 2.6e-11 73.2 166 29.5
PRCOL_00001203 Prasinoderma coloniale HOM05D003546 ORTHO05D005667 5.8e-11 72.0 228 30.3
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 7.6e-11 71.6 140 31.4
SMO119G0495 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 1.3e-10 70.9 204 29.9
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 2.9e-10 69.7 205 28.8
CBR_g61469 Chara braunii HOM05D003546 ORTHO05D005667 1.4e-09 67.4 149 34.2
CANSAT01G1040 Cannabis sativa HOM05D003225 ORTHO05D003818 3.2e-09 66.2 120 31.7
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 3.2e-09 66.2 140 30.7
arahy.Tifrunner.gnm1.ann1.ZCX39R Arachis hypogaea HOM05D003225 ORTHO05D003818 5.4e-09 65.5 120 32.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 5.4e-09 65.5 209 25.4
arahy.Tifrunner.gnm1.ann1.5ZSF1B Arachis hypogaea HOM05D003225 ORTHO05D003818 9.3e-09 64.7 132 30.3
arahy.Tifrunner.gnm1.ann1.B239PN Arachis hypogaea HOM05D003225 ORTHO05D003818 9.3e-09 64.7 132 30.3
CANSAT01G2940 Cannabis sativa HOM05D003225 ORTHO05D003818 2.7e-08 63.2 120 30.8
Glyma.03G169400 Glycine max HOM05D003225 ORTHO05D003818 4.6e-08 62.4 156 25.0
Hund05507 Selenicereus undatus HOM05D003225 ORTHO05D003818 7.9e-08 61.6 137 25.5
MD10G1173500 Malus domestica HOM05D003225 ORTHO05D003818 1.0e-07 61.2 156 25.6
Sc02g0004250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 1.0e-07 61.2 115 27.8
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 1.0e-07 61.2 119 31.1
PGR083G1413 Punica granatum HOM05D003225 ORTHO05D003818 1.3e-07 60.8 165 24.8
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.8e-07 60.5 118 28.0
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.8e-07 60.5 118 28.0
Peaxi162Scf00043g01711 Petunia axillaris HOM05D003225 ORTHO05D003818 1.8e-07 60.5 158 26.6
Peaxi162Scf00214g00026 Petunia axillaris HOM05D003225 ORTHO05D003818 1.8e-07 60.5 158 27.2
AT4G28706 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 2.3e-07 60.1 158 24.7
Cre12.g531150 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 2.3e-07 60.1 120 31.7
Nitab4.5_0003050g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 3.0e-07 59.7 167 25.7
Psat3g050480 Pisum sativum HOM05D003225 ORTHO05D003818 3.0e-07 59.7 115 28.7
PGR083G2794 Punica granatum HOM05D003225 ORTHO05D003818 3.0e-07 59.7 165 24.8
Migut.D00492 Erythranthe guttata HOM05D003225 ORTHO05D003818 3.9e-07 59.3 115 28.7
Lalb_Chr25g0289811 Lupinus albus HOM05D003225 ORTHO05D003818 3.9e-07 59.3 157 23.6
Nitab4.5_0001381g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 5.1e-07 58.9 120 27.5
ATR0088G044 Amborella trichopoda HOM05D003225 ORTHO05D003818 6.7e-07 58.5 158 24.1
ECA248G2748 Erigeron canadensis HOM05D003225 ORTHO05D003818 6.7e-07 58.5 163 25.2
HanXRQChr10g0280301 Helianthus annuus HOM05D003225 ORTHO05D003818 8.7e-07 58.2 163 23.9
CAN.G1178.13 Capsicum annuum HOM05D003225 ORTHO05D003818 1.1e-06 57.8 111 28.8
Phvul.001G167800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 1.1e-06 57.8 119 26.1
CiPaw.04G191700 Carya illinoinensis HOM05D003225 ORTHO05D003818 1.5e-06 57.4 119 29.4
CBR_g19222 Chara braunii HOM05D003225 ORTHO05D003818 1.5e-06 57.4 136 27.2
AUR62025409 Chenopodium quinoa HOM05D003225 ORTHO05D003818 1.5e-06 57.4 151 25.2
ClCG07G001550 Citrullus lanatus HOM05D003225 ORTHO05D003818 1.5e-06 57.4 152 24.3
CsaV3_3G028560 Cucumis sativus L. HOM05D003225 ORTHO05D003818 1.9e-06 57.0 152 25.0
RcHm_v2.0_Chr6g0285941 Rosa chinensis HOM05D003225 ORTHO05D003818 1.9e-06 57.0 124 26.6
Sopen08g026860 Solanum pennellii HOM05D003225 ORTHO05D003818 1.9e-06 57.0 120 28.3
vmacro14785 Vaccinium macrocarpon HOM05D003225 ORTHO05D003818 1.9e-06 57.0 107 30.8
Actinidia30111 Actinidia chinensis HOM05D003225 ORTHO05D003818 2.5e-06 56.6 157 22.9
AL7G23810 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 2.5e-06 56.6 158 24.1
Peaxi162Scf01083g00112 Petunia axillaris HOM05D003225 ORTHO05D003818 2.5e-06 56.6 167 23.4
Sed0003992 Sechium edule HOM05D003225 ORTHO05D003818 2.5e-06 56.6 152 24.3
Solyc08g078370.4 Solanum lycopersicum HOM05D003225 ORTHO05D003818 2.5e-06 56.6 120 28.3
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 2.5e-06 56.6 119 26.9
VMungo1383G0903 Vigna mungo HOM05D003225 ORTHO05D003818 2.5e-06 56.6 115 27.8
Carub.0007s1194 Capsella rubella HOM05D003225 ORTHO05D003818 3.3e-06 56.2 158 24.1
MELO3C012819.2 Cucumis melo HOM05D003225 ORTHO05D003818 3.3e-06 56.2 152 25.0
Psat3g051960 Pisum sativum HOM05D003225 ORTHO05D003818 3.3e-06 56.2 115 29.6
Psat6g063880 Pisum sativum HOM05D003225 ORTHO05D003818 4.3e-06 55.8 119 26.9
FAN15G1218 Fragaria x ananassa HOM05D003225 ORTHO05D003818 5.6e-06 55.5 120 27.5
Hund18330 Selenicereus undatus HOM05D003225 ORTHO05D003818 5.6e-06 55.5 102 29.4
PGSC0003DMG400009744 Solanum tuberosum HOM05D003225 ORTHO05D003818 5.6e-06 55.5 158 24.7
Aqoxy5G00087 Aquilegia oxysepala HOM05D003225 ORTHO05D003818 7.4e-06 55.1 130 25.4
FvH4_2g20180 Fragaria vesca HOM05D003225 ORTHO05D003818 7.4e-06 55.1 124 27.4
FAN24G0301 Fragaria x ananassa HOM05D003225 ORTHO05D003818 7.4e-06 55.1 120 27.5
HanXRQChr01g0014831 Helianthus annuus HOM05D003225 ORTHO05D003818 7.4e-06 55.1 158 23.4
Lj1g0002088 Lotus japonicus HOM05D003225 ORTHO05D003818 7.4e-06 55.1 119 27.7
Medtr1g069320 Medicago truncatula HOM05D003225 ORTHO05D003818 7.4e-06 55.1 124 25.0
Medtr7g099270 Medicago truncatula HOM05D003225 ORTHO05D003818 7.4e-06 55.1 119 26.9
VMungo1383G3625 Vigna mungo HOM05D003225 ORTHO05D003818 7.4e-06 55.1 151 23.2
A01p09230 Brassica napus HOM05D000200 ORTHO05D000262 9.6e-06 54.7 119 26.1
Ciclev10020430m.g Citrus clementina HOM05D003225 ORTHO05D003818 9.6e-06 54.7 147 23.8
Lsat_1_v5_gn_5_180041 Lactuca sativa HOM05D003225 ORTHO05D003818 9.6e-06 54.7 158 25.3
VMungo0720G1759 Vigna mungo HOM05D003225 ORTHO05D003818 9.6e-06 54.7 162 25.3


User provided reference genes

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