Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 0.0e+00 1225.7 603 100.0
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 8.9e-47 192.6 392 32.1
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.7e-45 188.3 391 31.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 6.4e-45 186.4 400 29.8
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 4.1e-44 183.7 391 29.7
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.7e-43 181.0 386 29.0
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.0e-42 179.1 390 29.2
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.0e-42 179.1 390 29.2
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.0e-42 179.1 387 29.2
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 2.3e-42 177.9 387 30.5
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.5e-41 175.3 388 29.9
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.5e-41 174.5 392 27.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 4.3e-41 173.7 394 29.7
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.3e-41 173.7 372 31.7
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 4.3e-41 173.7 389 31.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.6e-40 171.8 387 29.2
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.8e-40 171.0 390 29.2
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 3.6e-40 170.6 375 29.3
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.0e-39 169.1 389 28.3
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 5.2e-39 166.8 377 30.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.5e-38 165.2 390 31.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 4.4e-38 163.7 391 29.4
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 4.4e-38 163.7 384 28.9
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 5.8e-38 163.3 392 29.1
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 9.8e-38 162.5 389 28.3
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.3e-37 162.2 381 28.3
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.3e-37 162.2 388 28.6
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-37 161.8 380 28.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-37 161.8 380 28.9
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.7e-37 161.8 376 29.5
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.7e-37 161.8 392 28.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 2.2e-37 161.4 395 31.6
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.2e-37 161.4 393 29.0
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.9e-37 161.0 388 27.6
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 2.9e-37 161.0 394 28.9
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.3e-37 159.5 386 29.3
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.1e-36 159.1 388 28.6
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.1e-36 159.1 392 28.3
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.1e-36 159.1 392 28.3
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.9e-36 158.3 405 29.6
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.9e-36 158.3 393 29.0
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.4e-36 157.9 375 28.8
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.4e-36 157.9 393 28.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.2e-36 157.5 394 27.7
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 3.2e-36 157.5 388 28.1
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 4.1e-36 157.1 392 28.8
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.1e-36 157.1 394 29.2
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.1e-36 157.1 408 28.4
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 5.4e-36 156.8 386 28.2
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 5.4e-36 156.8 391 28.4
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 9.2e-36 156.0 375 29.1
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 9.2e-36 156.0 394 28.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 9.2e-36 156.0 377 29.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 9.2e-36 156.0 395 28.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 9.2e-36 156.0 378 29.1
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.2e-35 155.6 388 29.4
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.2e-35 155.6 376 28.7
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.2e-35 155.6 375 29.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.2e-35 155.6 375 29.1
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.2e-35 155.6 375 29.1
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.2e-35 155.6 375 29.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.6e-35 155.2 378 29.6
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.6e-35 155.2 398 28.4
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.6e-35 155.2 394 26.9
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.6e-35 155.2 388 27.3
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.0e-35 154.8 390 28.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.0e-35 154.8 392 28.6
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.0e-35 154.8 386 29.5
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.7e-35 154.5 392 28.6
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.7e-35 154.5 390 27.7
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.7e-35 154.5 371 29.1
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.5e-35 154.1 408 28.2
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.5e-35 154.1 390 27.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.5e-35 154.1 392 29.6
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.6e-35 153.7 407 26.8
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 4.6e-35 153.7 401 27.9
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 7.8e-35 152.9 389 28.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 7.8e-35 152.9 399 28.1
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.8e-35 152.9 394 27.2
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.8e-35 152.9 374 31.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 7.8e-35 152.9 389 28.5
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.0e-34 152.5 392 27.8
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-34 152.1 390 27.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.3e-34 152.1 388 28.1
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.3e-34 152.1 393 27.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.3e-34 151.4 394 27.2
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.3e-34 151.4 389 27.0
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-34 151.4 392 26.5
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-34 151.4 392 26.5
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 3.0e-34 151.0 394 27.4
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 3.9e-34 150.6 392 28.3
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.9e-34 150.6 384 27.9
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.9e-34 150.6 383 29.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 5.0e-34 150.2 376 28.2
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 5.0e-34 150.2 388 28.4
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 5.0e-34 150.2 387 27.1
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 6.6e-34 149.8 395 27.6
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 6.6e-34 149.8 394 28.7
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 6.6e-34 149.8 389 27.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 6.6e-34 149.8 393 28.5
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 8.6e-34 149.4 380 28.4
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.6e-34 149.4 387 27.4
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.5e-33 148.7 388 28.1
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.9e-33 148.3 373 27.1
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.9e-33 148.3 387 28.2
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 2.5e-33 147.9 375 28.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.3e-33 147.5 376 26.9
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.3e-33 147.5 392 27.6
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 4.3e-33 147.1 376 29.0
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 5.6e-33 146.7 376 29.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 9.5e-33 146.0 389 27.2
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.2e-32 145.6 386 26.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.2e-32 145.6 386 27.5
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.2e-32 145.6 374 28.1
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.6e-32 145.2 387 27.4
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.7e-32 143.7 371 26.4
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 6.2e-32 143.3 402 27.4
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.1e-32 142.9 387 27.4
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 8.1e-32 142.9 385 26.5
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.1e-31 142.5 393 28.5
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.1e-31 142.5 380 26.8
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-31 142.5 385 26.5
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.4e-31 142.1 373 27.1
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.8e-31 141.7 397 29.0
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 5.2e-31 140.2 387 27.4
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 6.8e-31 139.8 357 27.7
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.4e-30 137.5 379 25.3
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 9.8e-30 136.0 370 28.6
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.7e-29 135.2 393 25.7
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.7e-29 135.2 392 28.1
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.4e-29 133.3 246 27.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 8.3e-29 132.9 366 28.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.4e-28 132.1 349 29.2
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 9.2e-28 129.4 419 24.8
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 2.3e-26 124.8 396 27.0
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 5.2e-23 113.6 387 27.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 9.2e-20 102.8 398 24.1
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.0e-11 73.6 351 24.5
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-10 71.6 191 31.9
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.1e-08 65.1 89 34.8
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 4.8e-08 63.9 216 26.9
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 4.5e-06 57.4 68 44.1


User provided reference genes

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