Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.5e-120 434.1 224 100.0
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.1e-110 402.5 224 91.5
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 7.7e-105 384.0 224 86.6
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 3.8e-104 381.7 224 86.2
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.4e-101 373.2 222 83.8
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 4.0e-101 371.7 224 83.5
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 5.7e-100 367.9 224 82.1
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.1e-98 363.6 224 82.1
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.4e-98 363.2 222 83.3
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.2e-97 360.1 224 81.2
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 1.6e-97 359.8 224 82.1
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.0e-96 357.1 224 81.7
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 1.3e-96 356.7 225 81.8
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 3.2e-95 352.1 223 77.1
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 1.6e-94 349.7 223 78.9
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.7e-94 349.0 223 78.0
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 4.7e-94 348.2 223 78.0
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 6.1e-94 347.8 223 78.0
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 8.0e-94 347.4 223 75.8
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 5.2e-93 344.7 223 78.0
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 6.8e-93 344.4 223 76.7
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.2e-92 343.6 223 74.9
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 1.5e-92 343.2 223 76.7
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 5.7e-92 341.3 223 77.1
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.7e-91 339.7 223 75.8
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 2.2e-91 339.3 223 75.3
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 4.9e-91 338.2 223 74.9
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 6.3e-91 337.8 223 74.9
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 8.3e-91 337.4 222 75.7
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 8.3e-91 337.4 223 73.1
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.4e-90 336.7 223 75.3
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 2.4e-90 335.9 223 75.8
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 3.1e-90 335.5 221 76.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.4e-90 334.7 223 73.5
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 9.2e-90 334.0 224 74.1
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.6e-89 333.2 222 73.9
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 1.6e-89 333.2 224 73.2
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 5.9e-89 331.3 222 75.7
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 5.9e-89 331.3 223 75.3
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 5.9e-89 331.3 224 72.8
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 7.7e-89 330.9 223 76.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 7.7e-89 330.9 221 75.1
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.3e-88 330.1 208 78.4
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.7e-88 329.7 223 74.4
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.7e-88 329.7 223 75.3
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.1e-87 327.0 221 74.2
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 1.5e-87 326.6 250 68.0
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.9e-87 326.2 220 76.4
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 2.5e-87 325.9 221 74.2
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 4.3e-87 325.1 223 73.1
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 5.6e-87 324.7 223 74.0
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 5.6e-87 324.7 223 74.9
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 7.3e-87 324.3 220 70.9
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 9.5e-87 323.9 221 73.8
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 2.8e-86 322.4 223 72.2
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.6e-86 322.0 223 72.2
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 3.6e-86 322.0 224 73.7
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 4.7e-86 321.6 221 73.8
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 6.1e-86 321.2 223 72.2
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 8.0e-86 320.9 221 73.8
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 8.0e-86 320.9 222 72.5
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.8e-85 319.7 223 73.1
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 4.0e-85 318.5 225 71.1
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 4.0e-85 318.5 222 72.5
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.2e-84 317.0 224 71.9
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 1.5e-84 316.6 221 71.9
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 2.6e-84 315.8 225 70.2
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 5.7e-84 314.7 221 71.5
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 5.7e-84 314.7 224 73.7
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 7.5e-84 314.3 223 69.1
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 7.5e-84 314.3 223 69.1
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 7.5e-84 314.3 223 73.1
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 9.8e-84 313.9 223 69.1
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 9.8e-84 313.9 208 72.1
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 2.2e-83 312.8 223 70.4
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.2e-83 312.8 223 68.6
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.9e-83 312.4 222 68.9
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.7e-83 312.0 222 68.5
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 4.9e-83 311.6 223 68.2
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.1e-82 310.5 227 70.5
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 1.4e-82 310.1 227 69.6
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 1.4e-82 310.1 223 67.3
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 2.4e-82 309.3 224 67.0
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 3.2e-82 308.9 227 69.2
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 4.1e-82 308.5 219 68.9
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 5.4e-82 308.1 223 67.3
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 7.0e-82 307.8 223 66.8
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 7.0e-82 307.8 202 74.8
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.2e-81 307.0 220 70.9
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 1.6e-81 306.6 236 67.4
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.6e-81 306.6 236 67.4
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.6e-81 306.6 236 67.4
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 1.6e-81 306.6 222 70.3
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.6e-81 306.6 221 71.5
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.6e-81 306.6 221 71.5
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.0e-81 306.2 236 67.4
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.8e-81 304.3 236 66.5
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.3e-80 303.5 236 66.9
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 1.3e-80 303.5 222 68.0
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.3e-80 303.5 222 68.9
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 2.3e-80 302.8 208 69.7
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.3e-80 302.8 208 69.7
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 2.3e-80 302.8 224 68.3
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.9e-80 302.0 208 69.2
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.9e-80 302.0 208 69.2
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 6.6e-80 301.2 219 70.8
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.9e-79 299.7 219 69.9
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.9e-79 299.7 219 69.9
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 2.5e-79 299.3 205 72.7
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.3e-79 298.5 222 68.0
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 6.2e-78 294.7 223 68.6
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 6.2e-78 294.7 221 67.0
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.8e-77 293.1 223 67.7
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 2.0e-76 289.7 220 66.4
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.6e-76 289.3 224 64.3
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 3.2e-74 282.3 200 66.0
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 3.5e-73 278.9 224 66.1
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 4.6e-73 278.5 221 63.8
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.7e-72 276.6 166 78.9
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 5.0e-72 275.0 221 62.9
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-66 257.3 162 76.5
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 2.3e-61 239.6 185 65.9
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 2.2e-59 233.0 205 60.5
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 9.2e-58 227.6 221 53.8
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.1e-55 220.7 223 52.0
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 5.6e-55 218.4 224 52.2
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 1.5e-52 210.3 224 52.7
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 4.4e-52 208.8 223 52.5
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.3e-51 207.2 206 51.9
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 8.4e-51 204.5 205 52.7
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.1e-46 189.9 104 94.2
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 6.2e-46 188.3 214 44.9
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 4.9e-43 178.7 207 47.3
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 4.2e-42 175.6 185 55.7
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 8.1e-38 161.4 204 45.1
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 4.5e-28 129.0 206 38.8
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 1.1e-18 97.8 115 53.0
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 5.0e-11 72.4 100 50.0


User provided reference genes

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