Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 3.4e-115 418.3 207 100.0
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 5.5e-73 278.1 199 69.8
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 5.5e-73 278.1 193 72.0
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.0e-71 273.9 199 69.3
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.4e-71 273.5 193 69.4
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 3.9e-71 271.9 198 69.2
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.8e-68 263.1 193 67.9
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 1.3e-66 256.9 207 66.7
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 9.4e-65 250.8 204 63.7
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.0e-63 247.3 194 66.0
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 4.4e-54 215.3 194 54.6
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 5.7e-54 214.9 195 53.3
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 9.8e-54 214.2 193 55.4
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.8e-53 212.6 195 53.3
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.8e-53 212.6 195 53.3
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 8.3e-53 211.1 189 54.5
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.4e-52 210.3 198 52.5
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 2.4e-52 209.5 193 54.9
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 4.1e-52 208.8 206 51.9
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 9.1e-52 207.6 209 53.1
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.2e-51 207.2 192 54.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.6e-51 206.8 192 54.7
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 2.7e-51 206.1 195 52.3
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 3.5e-51 205.7 180 57.2
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.5e-51 205.7 192 54.2
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 7.7e-51 204.5 205 51.7
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 7.7e-51 204.5 205 51.7
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 1.0e-50 204.1 206 49.5
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 2.9e-50 202.6 192 52.1
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 5.0e-50 201.8 189 52.4
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 8.6e-50 201.1 190 53.7
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.1e-49 200.7 199 50.8
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 1.1e-49 200.7 191 52.9
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.5e-49 200.3 191 51.8
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.5e-49 200.3 205 50.7
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.9e-49 199.9 199 52.3
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.3e-49 199.1 188 52.7
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.3e-49 199.1 191 51.3
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 4.2e-49 198.7 195 51.3
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 5.5e-49 198.4 192 51.0
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 5.5e-49 198.4 195 50.8
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.2e-48 197.2 195 48.2
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.2e-48 197.2 192 52.6
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.2e-48 197.2 180 53.9
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 1.2e-48 197.2 186 52.2
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 2.1e-48 196.4 206 50.5
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 2.1e-48 196.4 205 48.8
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 4.7e-48 195.3 187 51.9
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.0e-47 194.1 204 50.0
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 1.4e-47 193.7 205 48.3
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 1.4e-47 193.7 192 52.1
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 1.8e-47 193.4 218 49.5
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 3.0e-47 192.6 187 50.8
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 3.0e-47 192.6 188 51.1
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 4.0e-47 192.2 219 47.5
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 5.2e-47 191.8 186 50.0
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 5.2e-47 191.8 186 53.8
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 6.8e-47 191.4 191 51.8
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 8.9e-47 191.0 199 48.7
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.6e-46 189.5 212 48.1
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 2.6e-46 189.5 187 51.9
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 2.6e-46 189.5 188 50.5
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 3.4e-46 189.1 219 46.6
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 3.4e-46 189.1 187 50.3
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 4.4e-46 188.7 205 46.8
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.7e-45 186.8 192 49.0
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 3.7e-45 185.7 228 43.9
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 3.7e-45 185.7 194 49.5
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 6.3e-45 184.9 187 49.2
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 6.3e-45 184.9 185 50.3
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 8.3e-45 184.5 209 48.3
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 1.1e-44 184.1 184 50.0
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.1e-44 182.6 190 49.5
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 5.4e-44 181.8 191 48.7
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 7.0e-44 181.4 190 48.9
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.6e-43 180.3 187 48.7
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 2.7e-43 179.5 205 45.9
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 4.5e-43 178.7 217 42.9
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 5.9e-43 178.3 167 52.7
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 7.8e-43 177.9 190 46.8
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.0e-42 177.6 200 46.5
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 3.8e-42 175.6 185 50.3
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.0e-42 175.3 209 47.4
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 8.6e-42 174.5 205 44.9
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 1.1e-41 174.1 192 49.0
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.5e-41 173.7 209 47.4
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 7.3e-41 171.4 159 53.5
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 9.5e-41 171.0 206 44.2
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 6.1e-40 168.3 200 43.5
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.4e-39 167.2 206 44.2
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 3.0e-39 166.0 191 44.0
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 1.2e-38 164.1 192 44.8
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.6e-38 162.9 195 44.1
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.7e-37 160.2 197 44.7
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 2.9e-37 159.5 195 45.6
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.9e-36 156.8 169 45.6
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.4e-36 156.4 206 43.7
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 3.2e-36 156.0 191 40.8
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.4e-36 155.2 191 41.9
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 7.8e-35 151.4 193 41.5
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.0e-34 151.0 191 40.8
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.3e-34 150.6 189 40.7
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.7e-34 150.2 206 40.3
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.1e-33 147.5 209 40.2
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 5.6e-33 145.2 191 40.3
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 1.6e-32 143.7 179 42.5
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.2e-29 133.3 101 60.4
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 8.3e-29 131.3 188 41.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 1.7e-26 123.6 185 37.8
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 3.4e-22 109.4 104 55.8
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 2.7e-19 99.8 64 67.2
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 5.1e-18 95.5 117 42.7
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 3.6e-16 89.4 183 32.8
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.5e-14 84.0 190 31.6
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.5e-06 57.4 59 42.4


User provided reference genes

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