Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26932_v3 Cicer arietinum L. HOM05D007797 ORTHO05D009741 6.7e-123 444.1 239 100.0
Medtr4g048070 Medicago truncatula HOM05D007797 ORTHO05D009741 3.7e-89 332.0 247 76.9
TPR.G4600 Trifolium pratense HOM05D007797 ORTHO05D009741 9.1e-88 327.4 246 76.8
Psat7g157320 Pisum sativum HOM05D007797 ORTHO05D009741 2.0e-87 326.2 247 75.7
Glyma.06G305600 Glycine max HOM05D007797 ORTHO05D009741 1.4e-75 287.0 248 67.3
Glyma.12G099000 Glycine max HOM05D007797 ORTHO05D009741 5.8e-74 281.6 251 66.5
Phvul.008G036400 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 7.5e-74 281.2 249 66.3
VMungo1127G0257 Vigna mungo HOM05D007797 ORTHO05D009741 2.4e-72 276.2 252 65.1
Phvul.011G103900 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 3.4e-66 255.8 251 61.4
Lalb_Chr19g0135861 Lupinus albus HOM05D007797 ORTHO05D009741 1.0e-62 244.2 259 58.3
Lalb_Chr01g0005641 Lupinus albus HOM05D007797 ORTHO05D009741 4.3e-61 238.8 245 59.6
arahy.Tifrunner.gnm1.ann1.WH4ZAG Arachis hypogaea HOM05D007797 ORTHO05D009741 3.9e-38 162.5 253 48.2
arahy.Tifrunner.gnm1.ann1.BQ3MLV Arachis hypogaea HOM05D007797 ORTHO05D009741 2.5e-37 159.8 243 50.2
PGR102G1585 Punica granatum HOM05D007797 ORTHO05D009741 5.3e-27 125.6 111 57.7
Cc02_g04270 Coffea canephora HOM05D007797 ORTHO05D009741 1.5e-26 124.0 122 53.3
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 1.3e-25 120.9 136 51.5
Hma1.2p1_0038F.1_g024100 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 8.4e-25 118.2 86 64.0
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 8.4e-25 118.2 103 56.3
CAN.G1045.3 Capsicum annuum HOM05D007797 ORTHO05D009741 2.4e-24 116.7 86 64.0
SGA_v2.0_scaffold36G14284 Striga asiatica HOM05D007797 ORTHO05D009741 2.4e-24 116.7 98 60.2
SGA_v2.0_scaffold104G30278 Striga asiatica HOM05D007797 ORTHO05D009741 5.5e-24 115.5 172 41.9
Cc00_g01610 Coffea canephora HOM05D007797 ORTHO05D009741 9.3e-24 114.8 86 64.0
PGSC0003DMG402008334 Solanum tuberosum HOM05D007797 ORTHO05D009741 9.3e-24 114.8 86 62.8
Gohir.A10G125300 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.6e-23 114.0 107 57.0
SHI26648 Sapria himalayana HOM05D007797 ORTHO05D009741 1.6e-23 114.0 86 62.8
Gohir.D10G141100 Gossypium hirsutum HOM05D007797 ORTHO05D009741 2.1e-23 113.6 107 56.1
Gorai.011G157000 Gossypium raimondii HOM05D007797 ORTHO05D009741 2.1e-23 113.6 107 56.1
Nn1g09938 Nelumbo nucifera HOM05D007797 ORTHO05D009741 1.3e-22 110.9 86 62.8
Nn1g09983 Nelumbo nucifera HOM05D007797 ORTHO05D009741 1.3e-22 110.9 86 62.8
Nn1g10175 Nelumbo nucifera HOM05D007797 ORTHO05D009741 1.3e-22 110.9 86 62.8
Ah.01g002110 Amaranthus hybridus HOM05D007797 ORTHO05D009741 1.8e-22 110.5 191 41.4
CANSAT16G0024 Cannabis sativa HOM05D007797 ORTHO05D009741 1.8e-22 110.5 86 61.6
Peaxi162Scf00216g00118 Petunia axillaris HOM05D007797 ORTHO05D009741 2.3e-22 110.2 86 60.5
Rhsim08G0173100 Rhododendron simsii HOM05D002913 ORTHO05D003323 2.3e-22 110.2 86 59.3
CAN.G547.14 Capsicum annuum HOM05D007797 ORTHO05D009741 6.7e-22 108.6 86 60.5
Potri.001G285100 Populus trichocarpa HOM05D007797 ORTHO05D009741 6.7e-22 108.6 154 42.2
Nitab4.5_0001952g0270 Nicotiana tabacum HOM05D007797 ORTHO05D009741 2.5e-21 106.7 81 61.7
Gohir.D05G088550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 5.6e-21 105.5 150 44.0
MD11G1291100 Malus domestica HOM05D007797 ORTHO05D009741 1.3e-20 104.4 84 61.9
Sabra15G0102600 Salix brachista HOM05D007797 ORTHO05D009741 1.3e-20 104.4 102 54.9
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 2.1e-20 103.6 88 56.8
Gohir.A05G087550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 2.1e-20 103.6 109 53.2
Gorai.001G167600 Gossypium raimondii HOM05D007797 ORTHO05D009741 2.1e-20 103.6 84 58.3
Potri.015G078000 Populus trichocarpa HOM05D007797 ORTHO05D009741 2.1e-20 103.6 87 60.9
AUR62012872 Chenopodium quinoa HOM05D007797 ORTHO05D009741 3.7e-20 102.8 85 60.0
AUR62017640 Chenopodium quinoa HOM05D007797 ORTHO05D009741 3.7e-20 102.8 85 60.0
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 3.7e-20 102.8 81 59.3
Nitab4.5_0000172g1860 Nicotiana tabacum HOM05D007797 ORTHO05D009741 1.4e-19 100.9 80 58.8
RcHm_v2.0_Chr6g0275631 Rosa chinensis HOM05D007797 ORTHO05D009741 1.4e-19 100.9 90 52.2
CAN.G14.28 Capsicum annuum HOM05D007797 ORTHO05D009741 1.8e-19 100.5 88 55.7
COL.COLO4_35798 Corchorus olitorius HOM05D007797 ORTHO05D009741 2.4e-19 100.1 106 53.8
CANSAT54G1603 Cannabis sativa HOM05D007797 ORTHO05D009741 3.1e-19 99.8 99 57.6
Gohir.D08G087700 Gossypium hirsutum HOM05D007797 ORTHO05D009741 3.1e-19 99.8 84 57.1
CsaV3_UNG208730 Cucumis sativus L. HOM05D007797 ORTHO05D009741 5.3e-19 99.0 81 59.3
Aa31LG3G17450 Aethionema arabicum HOM05D007797 ORTHO05D009741 3.4e-18 96.3 124 45.2
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 1.0e-17 94.7 75 60.0
FvH4_2g13880 Fragaria vesca HOM05D007797 ORTHO05D009741 3.8e-17 92.8 91 48.4
FAN27G1170 Fragaria x ananassa HOM05D007797 ORTHO05D009741 3.8e-17 92.8 91 48.4
THA.LOC104799736 Tarenaya hassleriana HOM05D007797 ORTHO05D009741 3.8e-17 92.8 100 49.0
EL10Ac9g22883 Beta vulgaris HOM05D007797 ORTHO05D009741 4.9e-17 92.4 86 55.8
Carub.0006s0813 Capsella rubella HOM05D007797 ORTHO05D009741 4.9e-17 92.4 115 43.5
FAN15G0457 Fragaria x ananassa HOM05D007797 ORTHO05D009741 8.4e-17 91.7 91 47.3
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 8.4e-17 91.7 81 55.6
Sp6g33770 Schrenkiella parvula HOM05D007797 ORTHO05D009741 1.1e-16 91.3 132 40.2
Carub.0003s2765 Capsella rubella HOM05D007797 ORTHO05D009741 1.4e-16 90.9 115 42.6
CARHR203780 Cardamine hirsuta HOM05D007797 ORTHO05D009741 1.4e-16 90.9 115 42.6
PSO384G3399 Papaver somniferum HOM05D007797 ORTHO05D009741 1.9e-16 90.5 97 51.5
PSO135G0291 Papaver somniferum HOM05D007797 ORTHO05D009741 3.2e-16 89.7 139 42.4
Aqoxy4G02474 Aquilegia oxysepala HOM05D007797 ORTHO05D009741 5.5e-16 89.0 95 48.4
TWI39G0893 Tripterygium wilfordii HOM05D007797 ORTHO05D009741 1.6e-15 87.4 85 52.9
AL6G20010 Arabidopsis lyrata HOM05D007797 ORTHO05D009741 2.1e-15 87.0 171 36.3
AT4G32210 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 2.1e-15 87.0 100 45.0
AT5G09600 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 2.1e-15 87.0 100 45.0
Hma1.2p1_0038F.1_g024110 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 2.7e-15 86.7 63 63.5
BcaB05g21543 Brassica carinata HOM05D007797 ORTHO05D009741 3.5e-15 86.3 132 38.6
Thhalv10016099m.g Eutrema salsugineum HOM05D007797 ORTHO05D009741 6.0e-15 85.5 168 34.5
BolC9t59546H Brassica oleracea HOM05D007797 ORTHO05D009741 1.0e-14 84.7 118 42.4
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 1.0e-14 84.7 88 50.0
A10p27750 Brassica napus HOM05D007797 ORTHO05D009741 1.3e-14 84.3 118 42.4
C09p67860 Brassica napus HOM05D007797 ORTHO05D009741 1.3e-14 84.3 118 42.4
BraA10t44826Z Brassica rapa HOM05D007797 ORTHO05D009741 1.3e-14 84.3 118 42.4
vmacro08745 Vaccinium macrocarpon HOM05D002681 ORTHO05D009741 1.3e-14 84.3 113 46.9
BcaB08g37196 Brassica carinata HOM05D007797 ORTHO05D009741 2.8e-12 76.6 91 47.3
AagrBONN_evm.TU.Sc2ySwM_344.249 Anthoceros agrestis HOM05D007797 ORTHO05D009741 3.6e-07 59.7 88 46.6
Dinv40760 Davidia involucrata HOM05D000228 ORTHO05D001122 1.8e-06 57.4 93 41.9
Nn1g03515 Nelumbo nucifera HOM05D000228 ORTHO05D001122 3.0e-06 56.6 93 40.9
CSS0029474 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001122 5.1e-06 55.8 103 38.8
HanXRQChr03g0076471 Helianthus annuus HOM05D000228 ORTHO05D001122 5.1e-06 55.8 93 39.8
Gohir.A04G014733 Gossypium hirsutum HOM05D000228 ORTHO05D001122 6.7e-06 55.5 93 39.8
Phvul.011G103700 Phaseolus vulgaris HOM05D000228 ORTHO05D001122 6.7e-06 55.5 93 40.9
SGA_v2.0_scaffold18G08541 Striga asiatica HOM05D000228 ORTHO05D001122 6.7e-06 55.5 93 38.7
Medtr4g048190 Medicago truncatula HOM05D000228 ORTHO05D001122 8.8e-06 55.1 93 40.9
Nitab4.5_0000925g0080 Nicotiana tabacum HOM05D008923 ORTHO05D011423 8.8e-06 55.1 39 66.7


User provided reference genes

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