Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1885.5 932 100.0
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1885.5 932 100.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 0.0e+00 1377.5 871 79.6
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1338.9 874 78.3
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1255.0 817 77.7
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1239.2 889 72.1
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1218.0 888 70.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1208.4 886 69.8
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1204.9 886 69.5
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 0.0e+00 1182.5 884 68.6
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 0.0e+00 1112.8 886 64.9
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 6.4e-312 1074.3 860 65.1
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.0e-279 966.1 921 57.5
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.4e-277 959.1 932 57.8
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 3.1e-256 889.0 875 55.0
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 8.4e-254 880.9 862 54.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.2e-253 879.0 866 54.7
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 5.4e-253 878.2 867 54.9
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.9e-246 855.1 871 54.4
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 8.4e-246 854.4 872 52.8
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.9e-245 853.2 876 53.5
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 4.2e-245 852.0 870 52.6
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.2e-244 850.5 874 53.3
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 8.7e-243 844.3 874 53.0
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.1e-241 839.7 898 52.1
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.4e-240 836.3 873 52.8
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.5e-239 832.0 858 53.4
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.7e-238 830.1 872 52.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 6.4e-238 828.2 872 52.5
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.4e-237 826.2 874 51.6
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.7e-236 822.8 892 51.8
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.6e-236 822.0 858 52.8
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 7.9e-236 821.2 874 51.5
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.0e-235 819.3 875 51.0
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.5e-234 817.0 874 51.7
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.9e-234 816.6 862 52.4
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.4e-234 814.7 861 52.8
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.9e-229 800.0 873 49.6
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-227 793.5 873 50.9
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 8.7e-227 791.2 872 50.5
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-226 790.4 873 50.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.4e-223 779.2 879 49.5
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-222 777.3 873 50.2
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 7.1e-221 771.5 883 48.9
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.8e-209 733.0 909 46.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.0e-207 726.9 847 47.5
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 7.7e-207 724.9 864 47.9
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 2.9e-206 723.0 871 47.6
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.6e-204 716.1 865 46.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 6.1e-204 715.3 866 46.7
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.8e-203 713.8 850 46.8
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.3e-203 713.4 899 46.2
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.5e-202 710.7 854 48.2
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.0e-202 710.3 882 47.7
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 5.7e-202 708.8 900 45.8
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 5.3e-200 702.2 848 47.2
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 7.0e-200 701.8 862 47.1
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.2e-199 701.0 863 46.3
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.2e-199 701.0 862 47.0
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.5e-199 700.7 865 46.5
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.4e-199 699.5 857 47.4
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 7.7e-199 698.4 852 46.8
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 2.9e-198 696.4 850 47.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 2.9e-198 696.4 850 47.3
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 5.5e-197 692.2 857 46.0
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 9.4e-197 691.4 863 46.9
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.6e-196 690.6 886 45.3
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 2.1e-196 690.3 866 45.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 2.7e-196 689.9 860 46.2
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 8.0e-196 688.3 851 45.6
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.4e-195 687.6 859 46.0
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 5.2e-195 685.6 852 45.9
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.0e-194 683.7 858 47.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.4e-194 682.6 849 48.1
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.7e-194 682.2 867 45.6
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 7.4e-194 681.8 887 44.4
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.8e-193 679.1 742 51.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.8e-192 677.2 887 44.9
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 5.3e-192 675.6 832 45.8
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.6e-191 674.1 907 44.5
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 7.7e-191 671.8 869 44.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-189 666.8 735 50.6
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 9.4e-189 664.8 888 44.7
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 2.3e-187 660.2 869 44.5
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 6.7e-187 658.7 874 45.0
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 2.6e-186 656.8 863 44.6
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 3.3e-186 656.4 840 44.8
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 3.3e-186 656.4 840 44.8
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 8.2e-185 651.7 759 49.1
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 9.1e-184 648.3 854 44.6
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.2e-183 647.9 865 43.9
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 2.0e-183 647.1 780 44.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.1e-181 641.3 964 41.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.5e-181 641.0 852 44.2
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.4e-179 634.4 921 41.9
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 4.4e-178 629.4 888 42.6
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 6.6e-174 615.5 862 44.1
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.9e-173 614.0 675 51.1
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.4e-170 603.2 623 52.2
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 7.0e-168 595.5 826 43.3
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 4.5e-167 592.8 605 52.7
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.4e-163 581.3 857 42.6
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.7e-158 564.3 728 45.3
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 2.1e-156 557.4 866 39.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 8.9e-155 552.0 776 44.1
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 8.3e-153 545.4 862 40.8
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 6.0e-151 539.3 562 54.6
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.1e-147 526.9 702 44.3
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 8.9e-147 525.4 578 51.2
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.3e-141 506.5 869 38.6
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.1e-139 501.9 606 47.7
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.3e-133 479.9 665 45.3
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 5.3e-131 473.0 684 41.8
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 9.9e-130 468.8 634 42.7
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 9.9e-130 468.8 333 73.0
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 1.9e-128 464.5 550 47.8
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 6.2e-116 422.9 508 47.2
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.7e-102 376.3 553 43.6
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 4.8e-100 370.2 355 53.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 8.2e-100 369.4 251 76.1
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 5.0e-97 360.1 964 29.9
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.0e-94 352.4 544 38.8
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.8e-92 344.4 492 42.7
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.8e-92 344.4 656 34.5
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 6.5e-89 333.2 369 49.3
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.0e-86 324.3 634 34.9
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-85 322.4 313 55.0
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 1.9e-80 305.1 593 32.4
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 2.7e-79 301.2 191 77.5
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.8e-75 288.5 643 32.8
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 3.5e-74 284.3 483 36.4
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.3e-73 282.3 470 38.7
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.4e-67 261.5 220 60.9
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.7e-60 238.8 191 63.9
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 2.0e-58 231.9 164 71.3
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.4e-54 219.2 164 69.5
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 5.7e-53 213.8 188 60.6
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 4.5e-50 204.1 122 81.1
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 4.5e-50 204.1 122 82.0
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.8e-50 203.4 229 50.2
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 6.6e-49 200.3 153 68.6
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 8.6e-49 199.9 153 68.6
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.1e-48 199.5 172 58.7
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 8.0e-47 193.4 161 59.6
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.4e-46 192.6 172 57.6
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 5.2e-46 190.7 296 40.2
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 6.8e-46 190.3 153 66.7
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 6.4e-44 183.7 181 55.2
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 7.0e-43 180.3 166 60.2
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 3.0e-41 174.9 149 61.7
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 9.5e-40 169.9 195 47.7
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.2e-37 162.9 146 57.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 9.8e-37 159.8 466 31.3
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 3.5e-34 151.4 133 57.9
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 1.5e-32 146.0 110 59.1
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 2.8e-31 141.7 282 36.2
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 3.6e-31 141.4 118 64.4
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.5e-29 136.0 687 22.4
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.9e-27 129.0 103 56.3
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.1e-27 127.9 98 65.3
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-25 123.2 96 64.6
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.3e-25 122.9 260 31.2
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.3e-24 117.9 91 64.8
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.6e-21 108.6 71 70.4
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 2.9e-20 105.1 307 25.7
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 6.4e-20 104.0 68 69.1
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 8.4e-20 103.6 363 25.3
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 6.9e-14 84.0 213 33.3
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 4.9e-12 77.8 74 55.4
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 6.4e-12 77.4 241 28.6
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.6e-10 72.8 80 48.8
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.1e-10 72.4 49 65.3
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 2.1e-10 72.4 55 65.5
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.3e-09 69.7 90 45.6
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 8.7e-09 67.0 143 30.1
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.7e-09 67.0 56 57.1
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.3e-08 64.7 139 31.7
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 5.6e-08 64.3 93 44.1
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.6e-07 61.6 53 60.4
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 8.1e-07 60.5 56 51.8


User provided reference genes

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