Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.9e-167 592.4 297 100.0
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 8.6e-144 513.8 321 81.9
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.9e-143 512.7 322 82.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.0e-141 506.9 328 80.2
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.0e-136 490.3 316 79.1
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.2e-132 476.9 316 78.2
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 9.8e-132 473.8 316 77.5
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 2.2e-131 472.6 319 76.8
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.1e-130 470.3 319 76.5
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 3.9e-128 461.8 319 75.2
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.7e-123 446.4 334 71.6
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.9e-123 445.7 322 73.9
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 4.4e-116 421.8 324 68.8
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 5.8e-116 421.4 319 69.3
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 9.9e-116 420.6 333 67.6
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.2e-115 419.5 319 69.3
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 8.3e-115 417.5 316 69.9
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 3.2e-114 415.6 324 67.9
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.2e-113 413.7 319 69.0
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.6e-113 413.3 332 66.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 6.0e-113 411.4 316 69.0
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.0e-112 410.6 316 68.7
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-112 409.8 316 68.7
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.0e-112 409.1 316 68.7
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.1e-112 408.3 316 68.7
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.5e-111 406.8 316 69.0
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.5e-111 406.0 316 68.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.6e-110 403.3 318 66.7
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.8e-110 402.5 318 66.7
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.7e-110 401.7 333 64.9
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 8.1e-110 401.0 322 66.1
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 8.1e-110 401.0 320 65.9
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.4e-109 400.2 318 65.4
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.4e-109 400.2 316 66.1
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.4e-109 399.4 318 67.0
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 4.0e-109 398.7 318 66.4
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 4.0e-109 398.7 318 66.7
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.2e-109 398.3 328 67.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.6e-108 396.0 326 66.3
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.6e-108 396.0 330 63.6
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.6e-108 396.0 318 66.7
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 9.9e-108 394.0 319 65.8
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 9.9e-108 394.0 318 65.7
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.9e-107 392.5 325 64.6
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 4.9e-107 391.7 318 64.8
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 6.4e-107 391.3 326 65.6
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.4e-107 391.3 315 66.7
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 6.4e-107 391.3 318 65.4
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 8.4e-107 391.0 326 65.3
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-106 390.6 319 64.3
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.9e-106 389.8 326 64.7
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 9.2e-106 387.5 327 64.5
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.2e-106 387.5 327 64.5
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.1e-105 386.3 326 64.7
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 2.7e-105 386.0 319 63.6
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.0e-104 382.5 328 63.4
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.9e-104 382.1 320 64.1
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 5.1e-104 381.7 320 63.4
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.1e-103 380.6 318 63.8
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 7.3e-103 377.9 314 63.7
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.6e-102 376.7 313 64.9
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.1e-102 376.3 329 62.3
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.1e-102 376.3 330 62.1
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 4.7e-102 375.2 331 62.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 6.2e-102 374.8 331 62.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 8.1e-102 374.4 328 63.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.1e-101 374.0 318 62.9
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 3.1e-101 372.5 333 61.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 3.1e-101 372.5 331 62.2
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 4.0e-101 372.1 313 63.6
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 5.3e-101 371.7 330 61.8
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 9.0e-101 370.9 333 61.3
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.2e-100 370.5 323 64.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.4e-100 369.0 332 60.2
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.4e-100 368.6 334 60.2
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.8e-100 368.2 307 65.1
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 3.8e-99 365.5 304 64.8
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.4e-98 363.6 326 63.5
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.4e-98 362.8 317 62.5
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.4e-98 362.8 317 62.5
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 7.1e-98 361.3 326 61.3
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.2e-97 360.5 330 60.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 3.5e-97 359.0 326 61.3
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.8e-97 357.8 360 56.1
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.0e-96 357.5 316 62.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.3e-96 357.1 329 59.9
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 3.0e-96 355.9 334 59.0
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 8.7e-96 354.4 326 60.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 8.7e-96 354.4 326 60.1
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.3e-95 352.1 275 69.5
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.6e-95 351.7 334 57.8
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 9.6e-95 350.9 316 61.4
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.6e-94 350.1 339 58.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 3.1e-93 345.9 326 59.8
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 6.9e-93 344.7 325 60.0
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 2.6e-92 342.8 330 58.8
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.3e-91 340.5 396 52.5
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 3.2e-90 335.9 277 66.4
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 4.2e-90 335.5 330 58.2
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.6e-86 323.6 254 68.5
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 3.4e-84 315.8 324 57.4
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 8.4e-83 311.2 301 59.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.1e-82 310.8 284 60.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.9e-82 310.1 284 60.9
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.7e-78 295.8 300 55.7
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.1e-77 292.7 297 53.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 9.0e-77 291.2 281 58.7
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.2e-76 290.8 277 59.6
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.2e-76 290.8 283 59.4
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 8.4e-75 284.6 351 46.2
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.5e-74 282.0 323 51.4
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 9.3e-74 281.2 326 52.1
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.8e-72 276.9 328 50.3
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 2.8e-70 269.6 323 50.8
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.0e-69 264.6 282 54.6
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.0e-67 258.8 326 49.7
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 6.5e-67 258.5 333 44.7
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-65 254.2 311 48.9
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.0e-63 246.9 309 48.5
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.7e-62 243.8 350 43.1
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.7e-62 242.7 254 58.3
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 5.3e-61 238.8 320 46.6
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 8.5e-59 231.5 352 40.3
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 8.5e-59 231.5 326 41.1
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.1e-55 221.1 333 41.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.7e-51 207.2 177 62.1
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.8e-51 206.1 288 46.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.2e-42 176.4 121 79.3
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.2e-41 174.5 196 50.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 2.3e-40 170.2 153 61.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 6.5e-35 152.1 285 36.5
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 3.4e-31 139.8 106 67.9
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 5.7e-23 112.5 64 87.5
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 3.3e-18 96.7 178 33.7
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 2.8e-17 93.6 65 70.8
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 3.6e-17 93.2 246 27.2
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 4.0e-16 89.7 76 61.8
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.6e-15 87.0 151 33.8
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.7e-11 74.3 51 64.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.8e-09 67.0 77 50.6
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.8e-07 59.3 76 47.4
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.3e-06 58.2 106 42.5
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.7e-06 57.8 28 92.9
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 8.3e-06 55.5 190 22.1


User provided reference genes

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