Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.0e-108 395.2 200 100.0
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.3e-44 183.0 117 83.8
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 9.8e-43 177.6 117 81.2
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.8e-42 176.0 121 79.3
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 6.3e-42 174.9 117 79.5
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 2.4e-41 172.9 141 70.9
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 4.3e-38 162.2 117 74.4
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 4.3e-38 162.2 117 74.4
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.6e-37 160.2 117 75.2
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.8e-37 159.5 121 71.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.3e-36 156.4 117 72.6
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 3.0e-36 156.0 117 74.4
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.2e-35 154.1 117 71.8
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.1e-33 147.5 141 63.1
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.4e-33 146.4 141 61.7
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 2.4e-33 146.4 141 62.4
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 5.4e-33 145.2 140 60.7
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.0e-33 144.8 117 68.4
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 7.0e-33 144.8 117 70.1
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 7.0e-33 144.8 138 59.4
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.0e-33 144.8 214 45.3
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.7e-32 142.9 117 68.4
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.7e-32 142.9 214 45.8
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.5e-32 142.5 214 45.8
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.8e-32 141.4 214 45.3
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 7.8e-32 141.4 198 46.5
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.0e-31 141.0 214 45.3
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.3e-31 140.6 214 45.3
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.3e-31 139.8 139 58.3
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.9e-31 139.0 138 60.1
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.9e-31 139.0 214 44.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 3.9e-31 139.0 117 64.1
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 3.9e-31 139.0 117 65.8
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.1e-30 137.5 117 66.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.5e-30 137.1 117 65.8
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-30 137.1 117 64.1
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.5e-30 136.3 138 58.7
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 3.3e-30 136.0 144 56.9
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.3e-30 136.0 124 62.1
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 5.6e-30 135.2 140 55.0
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 7.3e-30 134.8 117 65.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 9.5e-30 134.4 117 65.0
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.2e-29 134.0 140 55.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.6e-29 133.7 140 54.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.1e-29 133.3 138 56.5
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.8e-29 132.9 117 65.8
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.6e-29 132.5 117 64.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 6.2e-29 131.7 117 65.0
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 8.0e-29 131.3 124 62.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 8.0e-29 131.3 124 62.9
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 8.0e-29 131.3 147 53.7
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.1e-28 131.0 138 56.5
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.4e-28 130.6 140 54.3
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 2.3e-28 129.8 117 61.5
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.3e-28 129.8 124 60.5
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.1e-28 129.4 117 65.0
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 4.0e-28 129.0 117 61.5
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 5.2e-28 128.6 124 61.3
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.8e-28 128.3 124 61.3
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 8.9e-28 127.9 117 60.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.5e-27 127.1 117 63.2
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.5e-27 127.1 128 61.7
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.0e-27 126.7 146 54.1
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.0e-27 126.7 156 50.0
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.4e-27 125.9 117 62.4
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 5.8e-27 125.2 153 51.6
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 5.8e-27 125.2 125 60.8
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 7.5e-27 124.8 125 60.8
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.3e-26 124.0 124 57.3
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.7e-26 123.6 146 53.4
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.7e-26 123.6 124 58.9
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 2.2e-26 123.2 124 58.1
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.2e-26 123.2 125 58.4
Ca_16498_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 2.9e-26 122.9 80 78.8
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.9e-26 122.9 147 53.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.9e-26 122.9 125 60.0
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.7e-26 122.5 117 59.8
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 3.7e-26 122.5 206 43.7
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 4.9e-26 122.1 125 60.0
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 4.9e-26 122.1 125 60.0
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 6.4e-26 121.7 148 52.0
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.4e-25 120.6 140 52.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.4e-25 120.6 120 60.0
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.9e-25 120.2 148 52.0
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.9e-25 120.2 125 59.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.4e-25 119.8 123 59.3
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.2e-25 119.4 128 59.4
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.2e-25 119.4 120 59.2
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 3.2e-25 119.4 125 57.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.1e-25 119.0 124 56.5
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.4e-25 118.6 114 58.8
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 9.2e-25 117.9 110 60.0
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.6e-24 117.1 120 59.2
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.6e-24 117.1 120 59.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.6e-24 117.1 120 59.2
Ca_26838_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 1.6e-24 117.1 78 78.2
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.6e-24 117.1 150 50.7
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.0e-24 116.7 124 54.8
Ca_00704_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 6.0e-24 115.2 80 75.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 6.0e-24 115.2 208 42.3
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.0e-23 114.4 156 50.0
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.3e-23 113.2 124 58.1
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.0e-23 112.8 118 57.6
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 3.0e-23 112.8 118 57.6
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 3.0e-23 112.8 118 57.6
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.9e-23 112.5 143 49.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.3e-22 109.4 110 60.0
Ca_14517_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 3.3e-22 109.4 80 71.2
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 5.6e-22 108.6 120 55.0
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.1e-21 106.7 127 51.2
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 8.1e-21 104.8 155 45.8
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.8e-20 103.6 128 55.5
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.8e-20 103.6 102 57.8
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.3e-20 103.2 147 44.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.0e-20 102.4 124 53.2
Ca_11385_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 1.2e-19 100.9 78 71.8
Ca_23178_v3 Cicer arietinum L. HOM05D006655 ORTHO05D007986 2.6e-19 99.8 72 75.0
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 5.8e-19 98.6 119 52.1
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 5.8e-19 98.6 124 50.0
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 7.5e-19 98.2 80 63.8
Ca_01680_v3 Cicer arietinum L. HOM05D012096 ORTHO05D006040 1.4e-17 94.0 79 62.0
Ca_31279_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 4.1e-17 92.4 73 68.5
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.4e-17 92.0 124 46.0
Ca_00169_v3 Cicer arietinum L. HOM05D012096 ORTHO05D006040 7.1e-17 91.7 80 62.5
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 7.1e-17 91.7 113 49.6
Ca_23180_v3 Cicer arietinum L. HOM05D012096 ORTHO05D006040 3.5e-16 89.4 80 62.5
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.0e-15 87.8 107 49.5
Ca_15206_v3 Cicer arietinum L. HOM05D000251 ORTHO05D000414 1.3e-15 87.4 72 63.9
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.3e-15 86.7 128 44.5
Ca_30790_v3 Cicer arietinum L. HOM05D012096 ORTHO05D006040 2.5e-14 83.2 80 57.5
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.1e-13 80.1 85 49.4
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.6e-13 79.3 124 42.7
Ca_30830_v3 Cicer arietinum L. HOM05D012096 ORTHO05D148329 4.7e-13 79.0 83 56.6
Ca_31063_v3 Cicer arietinum L. HOM05D012096 ORTHO05D148490 4.7e-13 79.0 83 56.6
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.8e-12 77.0 129 40.3
Ca_18547_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 2.4e-12 76.6 57 71.9
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 2.4e-12 76.6 124 40.3
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.2e-11 74.3 77 54.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.5e-11 73.9 44 81.8
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.0e-11 73.6 80 50.0
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.6e-11 71.6 134 40.3
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 9.9e-11 71.2 142 34.5
Ca_05182_v3 Cicer arietinum L. HOM05D012018 ORTHO05D013664 2.2e-10 70.1 53 69.8
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 4.9e-10 68.9 44 79.5
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.9e-09 67.0 134 39.6
Ca_18145_v3 Cicer arietinum L. HOM05D012096 ORTHO05D149159 2.4e-09 66.6 57 66.7
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 4.1e-09 65.9 119 35.3
Ca_01700_v3 Cicer arietinum L. HOM05D012018 ORTHO05D013664 6.0e-08 62.0 56 64.3
Ca_28177_v3 Cicer arietinum L. HOM05D001730 ORTHO05D005730 7.8e-08 61.6 48 68.8
Ca_07420_v3 Cicer arietinum L. HOM05D012096 ORTHO05D147457 1.0e-07 61.2 82 51.2


User provided reference genes

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