Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 3.6e-183 644.8 330 100.0
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 8.9e-158 560.5 330 87.3
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.6e-154 549.7 337 85.2
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.3e-153 546.6 337 84.6
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 9.5e-152 540.4 329 83.3
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.2e-151 540.0 327 83.8
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 6.1e-151 537.7 328 85.7
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 3.1e-150 535.4 335 82.1
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 2.9e-148 528.9 334 81.4
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 1.2e-143 513.5 325 81.2
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 2.3e-142 509.2 340 77.6
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 1.2e-141 506.9 337 77.4
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 4.4e-141 505.0 327 78.3
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 2.2e-140 502.7 333 77.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 3.7e-140 501.9 332 79.2
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 8.3e-140 500.7 326 77.9
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 2.4e-139 499.2 326 78.2
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 2.4e-139 499.2 329 77.8
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 6.0e-138 494.6 329 77.5
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 3.0e-137 492.3 283 84.8
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 3.0e-137 492.3 283 84.8
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 3.9e-137 491.9 289 84.8
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 3.9e-137 491.9 310 80.0
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 6.6e-137 491.1 335 74.9
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 6.6e-137 491.1 310 80.3
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.1e-136 490.3 316 77.8
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.1e-136 490.3 289 83.4
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.5e-136 490.0 277 86.6
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.9e-136 489.6 276 87.0
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.9e-136 489.6 277 86.3
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 2.5e-136 489.2 290 83.8
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.5e-136 489.2 276 87.0
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.5e-136 489.2 276 87.0
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 3.3e-136 488.8 276 87.0
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 3.3e-136 488.8 330 76.4
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 5.6e-136 488.0 276 86.6
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 9.5e-136 487.3 319 76.2
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 1.2e-135 486.9 289 83.7
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.6e-135 486.5 299 80.3
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 3.6e-135 485.3 327 76.5
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 4.7e-135 485.0 332 74.7
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.1e-135 484.2 331 76.7
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.1e-134 483.8 326 75.2
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 1.1e-134 483.8 326 75.2
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.4e-134 483.4 298 80.9
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.4e-134 483.4 323 74.6
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 1.4e-134 483.4 289 84.1
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 5.2e-134 481.5 326 76.1
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 5.2e-134 481.5 299 79.3
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 5.2e-134 481.5 299 79.3
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.5e-133 479.9 291 80.8
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 1.5e-133 479.9 278 84.9
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 2.0e-133 479.6 308 78.2
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 3.4e-133 478.8 329 74.5
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 4.4e-133 478.4 303 78.9
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 4.4e-133 478.4 308 77.3
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 4.4e-133 478.4 315 77.1
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 1.3e-132 476.9 311 75.9
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 2.9e-132 475.7 298 77.9
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.7e-132 475.3 317 75.1
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 6.4e-132 474.6 299 77.6
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.4e-132 474.6 317 74.8
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 8.3e-132 474.2 332 73.8
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.1e-131 473.8 303 75.6
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.1e-131 473.8 308 75.6
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.4e-131 472.6 298 78.9
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 2.4e-131 472.6 328 74.1
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 3.2e-131 472.2 322 74.8
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.4e-131 471.5 328 74.4
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.6e-130 469.9 276 83.0
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.6e-130 469.9 318 74.5
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.1e-130 469.5 296 78.4
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.1e-130 469.5 329 74.8
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 4.6e-130 468.4 317 75.4
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.0e-130 468.0 329 74.5
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.7e-129 466.5 328 74.7
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 1.7e-129 466.5 308 76.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 2.3e-129 466.1 324 74.1
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 3.0e-129 465.7 310 76.5
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 6.6e-129 464.5 296 78.4
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 1.6e-127 459.9 283 77.0
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 2.6e-125 452.6 280 78.6
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 9.9e-125 450.7 278 78.1
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.6e-122 443.4 280 77.9
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 2.3e-121 439.5 295 75.3
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 4.3e-120 435.3 304 71.7
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 2.8e-119 432.6 270 76.7
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 3.6e-119 432.2 295 72.9
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 3.6e-119 432.2 304 71.4
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 4.8e-119 431.8 353 64.3
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 9.0e-118 427.6 277 74.7
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.2e-117 427.2 251 84.1
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 4.9e-116 421.8 310 70.6
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.0e-105 386.0 261 75.9
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 5.1e-105 385.2 216 88.0
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 5.6e-104 381.7 316 65.2
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 6.2e-103 378.3 245 75.1
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.1e-99 367.5 230 77.8
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.5e-99 365.2 244 76.6
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.5e-99 365.2 225 80.9
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.0e-98 361.7 244 77.0
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.0e-97 359.4 223 80.3
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 8.7e-97 357.8 247 74.5
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.5e-96 357.1 277 63.9
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.5e-96 357.1 252 74.2
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 9.0e-94 347.8 198 84.8
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.2e-92 343.2 274 60.2
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.1e-91 340.9 250 71.6
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.0e-89 334.3 201 78.6
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.5e-88 329.7 308 60.4
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 6.5e-76 288.5 263 52.9
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.7e-71 273.9 160 84.4
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 5.9e-69 265.4 168 76.8
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.1e-59 234.6 207 59.4
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.6e-56 223.4 142 79.6
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 2.9e-52 209.9 306 39.9
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 5.5e-51 205.7 326 39.3
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 1.8e-49 200.7 120 79.2
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 2.0e-48 197.2 140 70.7
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 2.4e-46 190.3 232 46.6
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 4.1e-46 189.5 116 79.3
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 2.0e-45 187.2 107 86.0
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.3e-44 184.5 128 71.1
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 1.2e-37 161.4 329 33.4
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.5e-32 144.4 233 39.9
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 7.0e-30 135.6 76 90.8
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.0e-29 134.0 77 83.1
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 5.6e-27 125.9 276 32.2
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.8e-25 120.9 63 87.3
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 5.2e-25 119.4 88 68.2
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 4.4e-24 116.3 73 75.3
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.5e-21 106.7 271 29.2
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.3e-19 99.0 116 45.7
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 3.7e-15 86.7 70 67.1
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 3.7e-15 86.7 70 67.1
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 3.2e-14 83.6 177 35.6
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 4.7e-10 69.7 46 71.7
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.7e-07 61.2 50 64.0
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 3.8e-07 60.1 49 67.3
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 3.8e-07 60.1 59 55.9


User provided reference genes

Program Settings