Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1720.3 954 100.0
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1540.0 959 89.7
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1508.4 960 88.8
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1449.5 962 86.4
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1343.9 963 73.8
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1302.0 966 72.9
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1293.1 963 77.3
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1292.3 966 72.8
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1276.5 951 73.3
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1268.4 958 76.8
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1265.4 962 76.9
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1245.3 964 75.2
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1206.4 969 67.6
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1200.3 954 67.7
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1178.3 943 72.5
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1175.6 1047 62.6
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1169.5 971 65.4
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1163.7 949 66.4
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1162.9 976 65.4
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1157.9 971 65.2
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1155.6 967 65.1
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1150.6 964 69.7
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1136.3 967 69.5
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1122.8 958 69.0
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1122.5 963 68.5
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1122.1 962 70.3
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1121.7 963 68.0
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1119.8 967 61.6
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1115.1 976 67.7
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1113.2 977 63.4
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1109.7 887 71.3
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1108.6 979 64.7
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1108.6 980 60.3
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1108.2 949 67.3
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1094.7 963 66.8
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1092.4 975 67.8
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1091.6 967 66.6
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1090.9 967 66.4
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1090.1 967 62.0
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1088.6 987 65.9
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1087.0 965 61.1
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1085.5 971 64.0
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 952 66.7
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1081.6 950 67.2
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1081.2 939 67.5
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1079.3 959 63.0
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1079.3 968 61.7
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1077.0 961 61.8
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1075.5 902 63.7
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 6.5e-312 1074.3 973 61.8
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 6.5e-312 1073.5 979 65.8
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 1.3e-311 1072.8 962 66.3
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 1.1e-309 1066.6 891 64.0
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 4.6e-308 1061.2 961 66.8
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 1.8e-307 1059.3 960 60.9
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.8e-307 1059.3 984 59.5
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 3.9e-307 1058.1 961 61.5
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 8.7e-307 1057.0 965 60.8
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 4.3e-306 1054.7 962 61.6
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 4.3e-306 1054.7 975 63.8
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 5.6e-306 1054.3 899 67.2
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 3.1e-304 1048.5 963 61.6
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.2e-303 1046.6 965 60.9
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 4.5e-303 1044.6 913 61.3
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 1.2e-300 1036.6 999 58.7
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 1.8e-299 1032.7 964 59.9
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 5.0e-294 1014.6 993 57.9
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 8.5e-294 1013.8 922 57.8
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 4.2e-293 1011.5 933 58.9
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 5.5e-293 1011.1 995 56.4
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 1.9e-290 1002.7 881 58.8
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 3.1e-288 995.3 881 61.2
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 2.6e-287 992.3 939 58.1
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 1.1e-285 986.9 976 61.3
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.3e-283 979.2 995 55.6
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.2e-281 972.6 993 55.8
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 2.8e-281 972.2 963 56.0
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 6.1e-276 954.5 894 59.6
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 4.8e-273 944.9 975 60.1
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 9.1e-272 940.6 809 63.9
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 5.9e-271 937.9 969 60.1
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 4.2e-269 931.8 967 54.8
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.0e-267 925.6 973 60.0
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.0e-267 925.6 973 60.0
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 1.5e-266 923.3 968 59.1
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 4.4e-266 921.8 971 60.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 1.0e-262 910.6 972 59.3
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 2.2e-262 909.4 973 58.7
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 2.2e-262 909.4 963 59.4
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 5.0e-262 908.3 965 58.9
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 1.1e-261 907.1 963 59.3
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 4.2e-261 905.2 966 58.9
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 9.4e-261 904.0 961 58.6
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 8.0e-260 901.0 957 54.0
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.8e-259 899.8 885 61.9
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.5e-258 896.7 965 58.7
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 7.5e-258 894.4 956 53.1
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.2e-247 860.5 958 51.8
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 1.2e-244 850.5 1001 50.9
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 4.4e-218 762.3 836 53.1
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 3.2e-216 756.1 885 50.4
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 4.2e-216 755.7 774 54.9
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 5.5e-176 622.5 974 42.5
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 5.3e-171 605.9 610 60.3
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 3.2e-168 596.7 957 46.6
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 1.4e-158 564.7 821 48.0
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.6e-133 480.7 506 54.2
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 9.5e-128 462.2 538 48.5
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.4e-123 448.4 463 54.0
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 8.9e-118 429.1 808 36.1
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 2.4e-86 324.7 862 31.2
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 3.5e-82 310.8 782 31.1
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 3.4e-77 294.3 377 51.2
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 2.2e-63 248.4 538 37.4
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.2e-58 232.6 815 25.5
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 5.9e-53 213.8 223 50.2
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 6.7e-49 200.3 172 59.9
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 8.8e-49 199.9 219 47.0
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 5.2e-33 147.5 82 87.8
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.7e-24 117.5 67 79.1
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 1.3e-23 116.3 66 86.4
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 1.0e-20 106.7 90 60.0
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 2.3e-20 105.5 117 49.6
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 2.9e-20 105.1 90 58.9
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 6.8e-17 94.0 100 52.0
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 6.8e-17 94.0 100 55.0
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.7e-15 88.2 190 35.3
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 9.2e-14 83.6 148 33.1
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.1e-10 72.4 37 89.2
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 5.8e-08 64.3 62 61.3
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 1.1e-06 60.1 55 54.5


User provided reference genes

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