Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.5e-152 541.6 274 100.0
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 4.5e-131 471.5 280 87.5
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.4e-111 406.8 262 81.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 8.8e-111 404.1 258 81.4
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 5.7e-110 401.4 262 80.2
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 7.5e-110 401.0 262 80.5
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.8e-109 399.1 262 80.2
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.4e-108 396.7 282 75.9
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.4e-108 396.7 244 84.8
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 7.0e-108 394.4 263 78.3
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.0e-107 392.9 263 79.5
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.3e-106 390.2 249 82.3
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.7e-106 389.8 261 77.8
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 6.5e-106 387.9 251 80.1
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 6.5e-106 387.9 267 77.5
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.1e-105 387.1 263 76.0
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.5e-105 386.7 258 77.1
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 5.5e-105 384.8 267 75.7
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.2e-104 383.6 262 76.3
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-104 382.9 276 74.3
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 4.7e-104 381.7 218 88.1
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 8.0e-104 380.9 245 81.2
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 8.0e-104 380.9 237 82.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 8.0e-104 380.9 270 74.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.4e-103 380.2 229 85.2
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 1.4e-103 380.2 212 90.1
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.8e-103 379.8 231 82.7
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.8e-103 379.8 270 74.1
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.8e-103 379.8 229 85.2
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 2.3e-103 379.4 239 81.2
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.3e-103 379.4 235 82.1
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 4.0e-103 378.6 262 76.3
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 5.2e-103 378.3 262 75.2
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.8e-103 377.9 241 79.3
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 8.8e-103 377.5 256 76.6
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.0e-102 376.3 240 80.8
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 2.0e-102 376.3 266 74.1
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 4.4e-102 375.2 275 75.3
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 5.7e-102 374.8 245 78.8
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 7.5e-102 374.4 245 80.0
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.3e-101 373.6 229 82.5
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.7e-101 373.2 266 74.1
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.2e-101 372.9 238 80.7
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 3.7e-101 372.1 225 83.6
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 3.7e-101 372.1 278 71.6
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 3.7e-101 372.1 261 74.3
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.8e-101 371.7 252 77.0
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 4.8e-101 371.7 212 85.8
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 4.8e-101 371.7 272 73.2
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 6.3e-101 371.3 248 77.0
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.4e-100 370.2 231 80.5
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.4e-100 370.2 220 84.1
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.8e-100 369.8 274 71.2
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.8e-100 369.8 198 91.4
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.4e-100 369.4 220 84.5
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 2.4e-100 369.4 272 72.4
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 5.4e-100 368.2 207 88.9
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 7.0e-100 367.9 224 83.0
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 7.0e-100 367.9 212 86.3
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 7.0e-100 367.9 229 81.2
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 9.1e-100 367.5 198 89.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 9.1e-100 367.5 238 79.8
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 9.1e-100 367.5 248 77.0
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.0e-99 366.3 213 85.0
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.7e-99 365.9 220 84.1
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.5e-99 365.5 230 79.6
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 5.9e-99 364.8 212 85.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 7.7e-99 364.4 213 85.4
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 7.7e-99 364.4 232 79.7
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 7.7e-99 364.4 232 79.7
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 7.7e-99 364.4 212 84.9
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.0e-98 364.0 256 75.0
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.0e-98 364.0 225 81.3
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.0e-98 364.0 215 84.7
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.7e-98 363.2 237 78.5
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.3e-98 362.8 228 80.7
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 2.3e-98 362.8 266 73.7
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.3e-98 362.8 236 77.5
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.3e-98 362.8 212 84.9
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 2.9e-98 362.5 220 83.6
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 3.8e-98 362.1 256 74.2
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 6.5e-98 361.3 226 78.8
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 6.5e-98 361.3 274 70.8
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.1e-97 360.5 278 70.5
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.5e-97 360.1 255 74.9
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.5e-97 359.4 250 75.2
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 3.2e-97 359.0 225 80.9
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 3.2e-97 359.0 225 81.3
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 4.2e-97 358.6 275 72.0
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 5.5e-97 358.2 216 83.8
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.6e-96 356.7 210 84.3
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.1e-96 356.3 193 89.1
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.6e-96 355.5 214 82.2
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 4.7e-96 355.1 237 77.6
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.4e-95 353.6 258 71.7
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.8e-95 353.2 264 70.8
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 3.0e-95 352.4 233 77.7
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.0e-95 352.1 203 85.2
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 8.8e-95 350.9 247 76.1
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.2e-94 350.5 226 77.9
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.5e-94 350.1 264 70.8
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.4e-94 349.0 229 76.4
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.4e-94 348.6 267 70.0
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 5.7e-94 348.2 210 83.3
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 5.7e-94 348.2 222 78.8
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.3e-93 347.1 262 70.6
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.7e-93 346.7 220 77.7
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 2.2e-93 346.3 210 82.9
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.2e-93 346.3 198 86.9
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 4.9e-93 345.1 238 75.6
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.8e-92 343.2 198 84.3
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.5e-91 338.6 217 78.3
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 3.3e-89 332.4 234 74.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.5e-89 330.9 298 61.1
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.2e-88 330.5 264 68.2
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 2.1e-88 329.7 166 97.0
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 9.8e-86 320.9 196 79.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 2.2e-85 319.7 263 65.8
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 6.4e-85 318.2 203 79.3
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 8.3e-85 317.8 212 77.4
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 2.4e-84 316.2 245 72.7
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 7.8e-83 311.2 193 80.8
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.3e-81 305.4 206 75.2
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 1.1e-79 300.8 226 69.0
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.8e-79 300.1 166 88.0
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 2.2e-77 293.1 216 73.1
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 3.7e-77 292.4 224 66.5
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.6e-75 287.0 153 90.2
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 6.0e-75 285.0 181 77.9
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-74 283.1 213 69.0
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 3.3e-73 279.3 204 70.6
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 3.3e-73 279.3 168 79.2
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 6.2e-72 275.0 145 93.1
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.2e-71 271.9 276 55.8
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.8e-71 271.6 230 63.5
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.8e-71 271.6 265 60.4
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.7e-69 266.9 200 69.0
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 2.2e-69 266.5 148 84.5
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.4e-69 265.0 159 83.0
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.4e-68 263.8 220 66.4
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 9.2e-68 261.2 226 63.3
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 9.2e-68 261.2 215 67.0
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.6e-64 250.4 149 82.6
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 2.6e-62 243.0 211 63.5
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.7e-61 240.4 167 76.0
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 1.4e-60 237.3 209 63.2
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 7.3e-57 224.9 170 71.8
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 2.8e-56 223.0 218 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 4.7e-56 222.2 132 77.3
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 2.8e-48 196.4 182 61.0
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 9.0e-47 191.4 106 86.8
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 2.0e-46 190.3 361 39.3
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 3.5e-43 179.5 140 71.4
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 6.9e-39 165.2 202 49.5
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 7.6e-38 161.8 188 43.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.9e-36 157.1 200 42.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.7e-32 142.9 228 39.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.1e-31 139.8 84 81.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 4.3e-25 119.4 69 84.1
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 2.2e-24 117.1 69 82.6
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 8.5e-21 105.1 59 88.1
Psat6g050400 Pisum sativum HOM05D004138 ORTHO05D004898 2.8e-16 90.1 82 63.4
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.2e-11 74.7 118 39.8
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.6e-11 73.2 84 48.8
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-10 71.6 36 91.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.4e-10 71.2 40 82.5
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-10 70.5 131 38.2
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 3.3e-09 66.6 37 83.8
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 4.4e-09 66.2 32 93.8
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.4e-09 66.2 49 71.4
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.2e-08 62.0 42 71.4
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.1e-07 59.7 34 82.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 6.9e-07 58.9 31 83.9


User provided reference genes

Program Settings