Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.8e-84 315.8 158 100.0
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 9.4e-65 250.4 139 90.6
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 3.2e-41 172.2 125 69.6
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 7.5e-38 161.0 128 64.8
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 1.8e-36 156.4 146 56.2
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 3.1e-36 155.6 124 65.3
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 2.0e-35 152.9 149 57.7
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 1.8e-31 139.8 134 57.5
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 4.4e-30 135.2 125 55.2
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 1.3e-29 133.7 125 56.0
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 2.4e-28 129.4 127 57.5
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 1.7e-26 123.2 122 54.1
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 3.0e-26 122.5 122 54.1
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 3.0e-26 122.5 127 52.0
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 6.6e-26 121.3 122 53.3
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 8.6e-26 120.9 122 53.3
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 3.3e-25 119.0 122 52.5
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 4.3e-25 118.6 123 52.8
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 2.8e-24 115.9 119 52.1
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 1.7e-21 106.7 135 44.4
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 2.2e-21 106.3 126 46.8
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 2.4e-20 102.8 117 49.6
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 5.4e-20 101.7 146 44.5
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 1.6e-19 100.1 132 42.4
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 3.5e-19 99.0 126 43.7
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 6.0e-19 98.2 113 43.4
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 6.0e-19 98.2 125 41.6
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 1.0e-18 97.4 123 44.7
TPR.G19124 Trifolium pratense HOM05D000651 ORTHO05D003990 1.7e-18 96.7 69 68.1
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 2.3e-18 96.3 94 48.9
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 3.0e-18 95.9 125 46.4
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 5.0e-18 95.1 141 41.1
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 6.6e-18 94.7 117 46.2
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 1.1e-17 94.0 112 43.8
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.1e-17 94.0 89 50.6
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 1.1e-17 94.0 146 38.4
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 1.1e-17 94.0 123 44.7
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.3e-17 92.4 89 49.4
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 4.3e-17 92.0 121 43.0
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 5.6e-17 91.7 99 46.5
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 5.6e-17 91.7 99 46.5
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 9.5e-17 90.9 126 42.9
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.2e-16 90.5 89 48.3
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 1.2e-16 90.5 153 36.6
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 2.1e-16 89.7 102 49.0
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 2.8e-16 89.4 153 38.6
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 2.8e-16 89.4 105 45.7
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.6e-16 89.0 89 48.3
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 3.6e-16 89.0 89 49.4
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 3.6e-16 89.0 94 47.9
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 4.7e-16 88.6 118 44.1
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.7e-16 88.6 125 40.0
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 4.7e-16 88.6 125 44.0
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 6.2e-16 88.2 109 39.4
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 6.2e-16 88.2 122 41.0
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 8.1e-16 87.8 127 38.6
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.4e-15 87.0 96 47.9
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 1.8e-15 86.7 129 41.1
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 4.0e-15 85.5 101 48.5
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 5.2e-15 85.1 155 34.8
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 6.8e-15 84.7 92 47.8
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 6.8e-15 84.7 125 39.2
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 1.2e-14 84.0 79 54.4
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 1.5e-14 83.6 114 40.4
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 2.0e-14 83.2 110 39.1
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 2.6e-14 82.8 146 37.7
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 2.6e-14 82.8 118 41.5
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 2.6e-14 82.8 118 41.5
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 3.4e-14 82.4 100 43.0
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 3.4e-14 82.4 144 35.4
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 4.4e-14 82.0 115 41.7
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 4.4e-14 82.0 110 39.1
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 4.4e-14 82.0 110 39.1
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 4.4e-14 82.0 119 42.0
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 5.8e-14 81.6 108 40.7
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 5.8e-14 81.6 117 41.0
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 5.8e-14 81.6 107 42.1
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 5.8e-14 81.6 116 40.5
arahy.Tifrunner.gnm1.ann1.FQ9DWZ Arachis hypogaea HOM05D000651 ORTHO05D003990 7.5e-14 81.3 76 56.6
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 7.5e-14 81.3 126 41.3
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.2e-13 79.7 126 40.5
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 2.2e-13 79.7 118 39.0
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 2.2e-13 79.7 117 36.8
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 2.2e-13 79.7 109 43.1
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 2.9e-13 79.3 75 53.3
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 3.7e-13 79.0 108 41.7
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 4.9e-13 78.6 62 62.9
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 4.9e-13 78.6 92 41.3
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 6.4e-13 78.2 111 36.9
TPR.G32483 Trifolium pratense HOM05D000651 ORTHO05D003990 8.3e-13 77.8 63 63.5
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 1.1e-12 77.4 117 37.6
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 1.4e-12 77.0 81 49.4
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 1.9e-12 76.6 88 45.5
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 4.1e-12 75.5 107 42.1
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 4.1e-12 75.5 63 58.7
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 5.4e-12 75.1 93 41.9
GSVIVG01011748001 Vitis vinifera HOM05D008822 ORTHO05D003990 9.2e-12 74.3 118 37.3
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 1.2e-11 73.9 127 39.4
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 1.2e-11 73.9 93 40.9
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 1.2e-11 73.9 72 51.4
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 1.6e-11 73.6 67 56.7
FAN17G1493 Fragaria x ananassa HOM05D000137 ORTHO05D000503 1.6e-11 73.6 98 39.8
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 1.6e-11 73.6 117 36.8
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.6e-11 73.6 93 41.9
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.1e-11 73.2 89 41.6
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 2.7e-11 72.8 114 36.8
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.7e-11 72.8 89 41.6
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 3.5e-11 72.4 89 39.3
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 4.6e-11 72.0 91 41.8
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 4.6e-11 72.0 136 35.3
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 4.6e-11 72.0 72 48.6
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 6.0e-11 71.6 91 42.9
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 6.0e-11 71.6 90 41.1
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 6.0e-11 71.6 72 48.6
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 1.0e-10 70.9 65 55.4
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 1.0e-10 70.9 69 50.7
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 1.3e-10 70.5 67 52.2
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 1.3e-10 70.5 105 38.1
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 1.7e-10 70.1 77 48.1
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.7e-10 70.1 123 38.2
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 1.7e-10 70.1 117 34.2
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 2.3e-10 69.7 66 54.5
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 2.3e-10 69.7 66 54.5
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 2.3e-10 69.7 106 38.7
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 3.9e-10 68.9 101 41.6
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 5.1e-10 68.6 117 34.2
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 6.6e-10 68.2 117 35.0
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 6.6e-10 68.2 117 34.2
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 8.6e-10 67.8 63 52.4
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.1e-09 67.4 63 54.0
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 1.1e-09 67.4 91 41.8
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 1.1e-09 67.4 72 45.8
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.9e-09 66.6 72 44.4
arahy.Tifrunner.gnm1.ann1.F0QMSU Arachis hypogaea HOM05D000651 ORTHO05D003990 3.3e-09 65.9 63 54.0
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 3.3e-09 65.9 70 47.1
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 4.3e-09 65.5 100 36.0
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 4.3e-09 65.5 69 49.3
arahy.Tifrunner.gnm1.ann1.UZQ5G1 Arachis hypogaea HOM05D000651 ORTHO05D003990 5.6e-09 65.1 137 35.0
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 5.6e-09 65.1 62 53.2
arahy.Tifrunner.gnm1.ann1.UQR3KX Arachis hypogaea HOM05D000651 ORTHO05D003990 7.3e-09 64.7 68 45.6
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 7.3e-09 64.7 104 36.5
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 9.5e-09 64.3 119 35.3
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 4.7e-08 62.0 118 31.4
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 6.2e-08 61.6 166 28.3
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 8.1e-08 61.2 66 50.0
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 1.1e-07 60.8 93 41.9
Prupe.1G325800 Prunus persica HOM05D021888 ORTHO05D003990 1.1e-07 60.8 63 52.4
Aqoxy3G02485 Aquilegia oxysepala HOM05D000651 ORTHO05D003990 1.8e-07 60.1 92 34.8
MBI19_g32901_MAGBIO Magnolia biondii HOM05D008822 ORTHO05D003990 1.8e-07 60.1 56 51.8
Ah.13g073970 Amaranthus hybridus HOM05D000294 ORTHO05D003990 2.3e-07 59.7 101 35.6
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 2.3e-07 59.7 93 39.8
Sed0005667 Sechium edule HOM05D021888 ORTHO05D003990 2.3e-07 59.7 61 47.5
Cpa.g.sc37.25 Carica papaya HOM05D008822 ORTHO05D003990 5.2e-07 58.5 63 52.4
DCAR_014730 Daucus carota HOM05D003305 ORTHO05D001298 1.5e-06 57.0 98 36.7
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 1.5e-06 57.0 73 41.1
Cpa.g.sc37.24 Carica papaya HOM05D008822 ORTHO05D003990 2.0e-06 56.6 68 48.5
Nn4g24189 Nelumbo nucifera HOM05D003305 ORTHO05D001298 2.6e-06 56.2 79 40.5
Aqoxy3G04208 Aquilegia oxysepala HOM05D032976 ORTHO05D003990 3.4e-06 55.8 100 31.0
Lsat_1_v5_gn_2_12280 Lactuca sativa HOM05D003305 ORTHO05D001298 4.4e-06 55.5 56 48.2
Prupe.5G231500 Prunus persica HOM05D008822 ORTHO05D003990 4.4e-06 55.5 94 36.2
Phvul.002G328400 Phaseolus vulgaris HOM05D003305 ORTHO05D001298 5.8e-06 55.1 68 44.1
Solyc11g013600.2 Solanum lycopersicum HOM05D000651 ORTHO05D003990 7.6e-06 54.7 117 30.8
DCAR_015823 Daucus carota HOM05D008822 ORTHO05D003990 9.9e-06 54.3 63 42.9


User provided reference genes

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