Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25675_v3 Cicer arietinum L. HOM05D002707 ORTHO05D002925 5.5e-53 210.7 105 100.0
Ca_23364_v3 Cicer arietinum L. HOM05D002707 ORTHO05D002925 6.5e-38 160.6 180 53.9
Ca_23359_v3 Cicer arietinum L. HOM05D002707 ORTHO05D002925 2.5e-37 158.7 180 52.8
Ca_23360_v3 Cicer arietinum L. HOM05D002707 ORTHO05D002925 7.5e-26 120.6 95 69.5
TPR.G4110 Trifolium pratense HOM05D002707 ORTHO05D002925 1.0e-22 110.2 175 38.9
Medtr1g115135 Medicago truncatula HOM05D002707 ORTHO05D002925 2.2e-22 109.0 175 38.9
Ca_11269_v3 Cicer arietinum L. HOM05D002707 ORTHO05D002925 3.8e-22 108.2 175 38.9
GSVIVG01034380001 Vitis vinifera HOM05D002707 ORTHO05D002925 1.9e-21 105.9 175 37.1
Glyma.20G101700 Glycine max HOM05D002707 ORTHO05D002925 2.1e-20 102.4 175 38.3
Phvul.007G013600 Phaseolus vulgaris HOM05D002707 ORTHO05D002925 2.1e-20 102.4 174 38.5
VMungo0720G1527 Vigna mungo HOM05D002707 ORTHO05D002925 2.7e-20 102.1 175 38.3
CANSAT78G0823 Cannabis sativa HOM05D002707 ORTHO05D002925 8.0e-20 100.5 176 37.5
Lj5g0021572 Lotus japonicus HOM05D002707 ORTHO05D002925 8.0e-20 100.5 175 37.7
FAN07G2687 Fragaria x ananassa HOM05D002707 ORTHO05D002925 4.0e-19 98.2 175 36.6
Ca_23357_v3 Cicer arietinum L. HOM05D002707 ORTHO05D002925 5.2e-19 97.8 48 95.8
Lalb_Chr21g0307071 Lupinus albus HOM05D002707 ORTHO05D002925 6.8e-19 97.4 177 35.6
Medtr8g020310 Medicago truncatula HOM05D002707 ORTHO05D002925 8.8e-19 97.1 180 37.2
Prupe.1G349900 Prunus persica HOM05D002707 ORTHO05D002925 8.8e-19 97.1 175 36.6
Potri.005G087600 Populus trichocarpa HOM05D002707 ORTHO05D002925 1.2e-18 96.7 175 36.0
TPR.G18458 Trifolium pratense HOM05D002707 ORTHO05D002925 1.5e-18 96.3 169 36.1
Duzib052G0594 Durio zibethinus HOM05D002707 ORTHO05D002925 2.0e-18 95.9 176 36.9
FvH4_4g37230 Fragaria vesca HOM05D002707 ORTHO05D002925 2.6e-18 95.5 175 36.0
Glyma.10G287600 Glycine max HOM05D002707 ORTHO05D002925 3.4e-18 95.1 172 37.2
SHI21188 Sapria himalayana HOM05D002707 ORTHO05D002925 3.4e-18 95.1 120 42.5
Thecc.02G154000 Theobroma cacao HOM05D002707 ORTHO05D002925 4.4e-18 94.7 176 36.4
CiPaw.15G001600 Carya illinoinensis HOM05D002707 ORTHO05D002925 7.5e-18 94.0 173 35.3
Hma1.2p1_0413F.1_g147390 Hydrangea macrophylla HOM05D002707 ORTHO05D002925 7.5e-18 94.0 175 35.4
Lsat_1_v5_gn_3_35260 Lactuca sativa HOM05D002707 ORTHO05D002925 7.5e-18 94.0 175 34.9
Lalb_Chr10g0094771 Lupinus albus HOM05D002707 ORTHO05D002925 7.5e-18 94.0 181 36.5
Potri.007G076300 Populus trichocarpa HOM05D002707 ORTHO05D002925 7.5e-18 94.0 175 35.4
Aqoxy3G04309 Aquilegia oxysepala HOM05D002707 ORTHO05D002925 9.8e-18 93.6 171 36.3
Atru.chr11.1263 Acer truncatum HOM05D002707 ORTHO05D002925 1.3e-17 93.2 175 35.4
Duzib248G1528 Durio zibethinus HOM05D002707 ORTHO05D002925 1.3e-17 93.2 176 35.8
Oeu006338.1 Olea europaea HOM05D002707 ORTHO05D002925 1.3e-17 93.2 168 34.5
HanXRQChr06g0171571 Helianthus annuus HOM05D002707 ORTHO05D002925 1.7e-17 92.8 175 34.9
RcHm_v2.0_Chr4g0447021 Rosa chinensis HOM05D002707 ORTHO05D002925 1.7e-17 92.8 175 35.4
Sabra05G0072400 Salix brachista HOM05D002707 ORTHO05D002925 1.7e-17 92.8 175 34.9
Sabra07G0064300 Salix brachista HOM05D002707 ORTHO05D002925 1.7e-17 92.8 175 35.4
Manes.11G001200 Manihot esculenta HOM05D002707 ORTHO05D002925 2.2e-17 92.4 174 34.5
ECA246G4648 Erigeron canadensis HOM05D002707 ORTHO05D002925 2.8e-17 92.0 175 34.9
Psat0s2189g0080 Pisum sativum HOM05D002707 ORTHO05D002925 2.8e-17 92.0 90 53.3
DCAR_026877 Daucus carota HOM05D002707 ORTHO05D002925 3.7e-17 91.7 175 34.3
Gohir.D02G190300 Gossypium hirsutum HOM05D002707 ORTHO05D002925 3.7e-17 91.7 176 35.8
Gorai.005G213000 Gossypium raimondii HOM05D002707 ORTHO05D002925 3.7e-17 91.7 176 35.8
Cfa018658 Carpinus fangiana HOM05D002707 ORTHO05D002925 6.3e-17 90.9 175 35.4
Gohir.A03G167200 Gossypium hirsutum HOM05D002707 ORTHO05D002925 1.1e-16 90.1 176 35.2
Nn4g25157 Nelumbo nucifera HOM05D002707 ORTHO05D002925 1.4e-16 89.7 171 35.1
PSO063G4385 Papaver somniferum HOM05D002707 ORTHO05D002925 1.4e-16 89.7 172 35.5
PSO782G4858 Papaver somniferum HOM05D002707 ORTHO05D002925 1.4e-16 89.7 172 35.5
MD13G1002500 Malus domestica HOM05D002707 ORTHO05D002925 3.1e-16 88.6 167 35.3
QL01p000822 Quercus lobata HOM05D002707 ORTHO05D002925 4.1e-16 88.2 90 51.1
Solyc02g150120.1 Solanum lycopersicum HOM05D002707 ORTHO05D002925 4.1e-16 88.2 175 32.6
MELO3C005073.2 Cucumis melo HOM05D002707 ORTHO05D002925 5.4e-16 87.8 172 33.1
MD00G1127000 Malus domestica HOM05D002707 ORTHO05D002925 5.4e-16 87.8 175 35.4
Duzib132G0358 Durio zibethinus HOM05D002707 ORTHO05D002925 7.0e-16 87.4 176 34.7
Peaxi162Scf00268g01424 Petunia axillaris HOM05D002707 ORTHO05D002925 7.0e-16 87.4 175 33.1
Psat4g182880 Pisum sativum HOM05D002707 ORTHO05D002925 7.0e-16 87.4 58 69.0
Sed0023629 Sechium edule HOM05D002707 ORTHO05D002925 9.1e-16 87.0 172 33.1
SGA_v2.0_scaffold65G22200 Striga asiatica HOM05D002707 ORTHO05D002925 9.1e-16 87.0 196 32.1
ClCG01G008040 Citrullus lanatus HOM05D002707 ORTHO05D002925 1.2e-15 86.7 142 38.7
Sopen02g008710 Solanum pennellii HOM05D002707 ORTHO05D002925 1.2e-15 86.7 175 32.6
Haze_17410 Corylus avellana HOM05D002707 ORTHO05D002925 1.6e-15 86.3 90 51.1
Haze_17421 Corylus avellana HOM05D002707 ORTHO05D002925 1.6e-15 86.3 90 51.1
Gohir.A13G062300 Gossypium hirsutum HOM05D002707 ORTHO05D002925 1.6e-15 86.3 168 34.5
Sp6g34280 Schrenkiella parvula HOM05D002707 ORTHO05D002925 1.6e-15 86.3 178 35.4
Aa31LG3G17940 Aethionema arabicum HOM05D002707 ORTHO05D002925 2.0e-15 85.9 169 33.7
Ah.01g012000 Amaranthus hybridus HOM05D002707 ORTHO05D002925 2.0e-15 85.9 176 33.5
CsaV3_5G021810 Cucumis sativus L. HOM05D002707 ORTHO05D002925 2.0e-15 85.9 172 32.6
BcaB01g05580 Brassica carinata HOM05D002707 ORTHO05D002925 2.7e-15 85.5 176 34.1
A10p28140 Brassica napus HOM05D002707 ORTHO05D002925 3.5e-15 85.1 169 33.7
BraA10t44863Z Brassica rapa HOM05D002707 ORTHO05D002925 3.5e-15 85.1 169 33.7
BcaB01g05653 Brassica carinata HOM05D002707 ORTHO05D002925 4.5e-15 84.7 169 33.7
A03p04000 Brassica napus HOM05D002707 ORTHO05D002925 4.5e-15 84.7 169 33.7
C03p04470 Brassica napus HOM05D002707 ORTHO05D002925 4.5e-15 84.7 169 33.7
BolC3t12978H Brassica oleracea HOM05D002707 ORTHO05D002925 4.5e-15 84.7 169 33.7
BraA03t09743Z Brassica rapa HOM05D002707 ORTHO05D002925 4.5e-15 84.7 169 33.7
Psat4g182960 Pisum sativum HOM05D002707 ORTHO05D002925 4.5e-15 84.7 57 68.4
Eucgr.J00344 Eucalyptus grandis HOM05D002707 ORTHO05D002925 7.7e-15 84.0 175 34.9
Gohir.D13G059600 Gossypium hirsutum HOM05D002707 ORTHO05D002925 1.0e-14 83.6 176 33.0
Carub.0006s0755 Capsella rubella HOM05D002707 ORTHO05D002925 1.3e-14 83.2 169 33.1
CAN.G187.3 Capsicum annuum HOM05D002707 ORTHO05D002925 1.3e-14 83.2 170 31.2
Gorai.013G067400 Gossypium raimondii HOM05D002707 ORTHO05D002925 1.3e-14 83.2 176 33.0
HanXRQChr04g0099281 Helianthus annuus HOM05D002707 ORTHO05D002925 1.3e-14 83.2 71 54.9
Hund08672 Selenicereus undatus HOM05D002707 ORTHO05D002925 1.3e-14 83.2 92 46.7
ATR0789G152 Amborella trichopoda HOM05D002707 ORTHO05D002925 1.7e-14 82.8 171 33.3
COL.COLO4_33121 Corchorus olitorius HOM05D002707 ORTHO05D002925 1.7e-14 82.8 90 48.9
Thhalv10013753m.g Eutrema salsugineum HOM05D002707 ORTHO05D002925 1.7e-14 82.8 178 34.8
Lj6A707G49 Lonicera japonica HOM05D002707 ORTHO05D002925 1.7e-14 82.8 89 48.3
THA.LOC104819359 Tarenaya hassleriana HOM05D002707 ORTHO05D002925 1.7e-14 82.8 167 32.3
arahy.Tifrunner.gnm1.ann1.RRWC6P Arachis hypogaea HOM05D002707 ORTHO05D002925 2.2e-14 82.4 176 34.1
MSTRG.2074 Avicennia marina HOM05D002707 ORTHO05D002925 2.2e-14 82.4 175 33.1
EL10Ac9g22990 Beta vulgaris HOM05D002707 ORTHO05D002925 2.2e-14 82.4 173 31.8
BcaB08g37242 Brassica carinata HOM05D002707 ORTHO05D002925 2.2e-14 82.4 169 33.1
BolC9t59582H Brassica oleracea HOM05D002707 ORTHO05D002925 2.2e-14 82.4 178 34.3
THA.LOC104818403 Tarenaya hassleriana HOM05D002707 ORTHO05D002925 2.2e-14 82.4 170 32.9
AL6G19310 Arabidopsis lyrata HOM05D002707 ORTHO05D002925 2.9e-14 82.0 169 33.1
AT5G08580 Arabidopsis thaliana HOM05D002707 ORTHO05D002925 2.9e-14 82.0 169 33.1
arahy.Tifrunner.gnm1.ann1.L3CNX8 Arachis hypogaea HOM05D002707 ORTHO05D002925 2.9e-14 82.0 176 34.1
Ciclev10031861m.g Citrus clementina HOM05D002707 ORTHO05D002925 2.9e-14 82.0 175 34.9
C09p68350 Brassica napus HOM05D002707 ORTHO05D002925 3.8e-14 81.6 59 64.4
CARHR204380 Cardamine hirsuta HOM05D002707 ORTHO05D002925 5.0e-14 81.3 59 62.7
Sc21g0003790 Simmondsia chinensis HOM05D002707 ORTHO05D002925 5.0e-14 81.3 59 59.3
AUR62017738 Chenopodium quinoa HOM05D002707 ORTHO05D002925 6.5e-14 80.9 173 31.2
Lj6A712T60 Lonicera japonica HOM05D002707 ORTHO05D002925 6.5e-14 80.9 55 63.6
MSTRG.13672 Avicennia marina HOM05D002707 ORTHO05D002925 8.5e-14 80.5 175 33.1
vmacro16003 Vaccinium macrocarpon HOM05D002707 ORTHO05D002925 8.5e-14 80.5 174 30.5
MELO3C011760.2 Cucumis melo HOM05D002707 ORTHO05D002925 1.5e-13 79.7 173 32.4
Dinv01364 Davidia involucrata HOM05D002707 ORTHO05D002925 1.9e-13 79.3 175 34.3
Cpa.g.sc1473.1 Carica papaya HOM05D002707 ORTHO05D002925 2.5e-13 79.0 175 32.6
Hund24390 Selenicereus undatus HOM05D002707 ORTHO05D002925 2.5e-13 79.0 92 45.7
CsaV3_5G029090 Cucumis sativus L. HOM05D002707 ORTHO05D002925 3.2e-13 78.6 173 32.4
SalBow2G2796 Salvia bowleyana HOM05D002707 ORTHO05D002925 5.5e-13 77.8 173 31.2
DCAR_023484 Daucus carota HOM05D002707 ORTHO05D002925 7.2e-13 77.4 171 32.2
Zm00001eb240010 Zea mays HOM05D002707 ORTHO05D002925 7.2e-13 77.4 167 31.1
Migut.E00674 Erythranthe guttata HOM05D002707 ORTHO05D002925 9.5e-13 77.0 171 33.3
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.1e-12 75.9 93 44.1
TPR.G4027 Trifolium pratense HOM05D002707 ORTHO05D002925 2.1e-12 75.9 45 71.1
RhsimUnG0102900 Rhododendron simsii HOM05D002707 ORTHO05D002925 2.7e-12 75.5 174 30.5
TPR.G34328 Trifolium pratense HOM05D002707 ORTHO05D002925 2.7e-12 75.5 82 48.8
TWI53G0888 Tripterygium wilfordii HOM05D002707 ORTHO05D002925 2.7e-12 75.5 172 32.6
SMO115G0197 Selaginella moellendorffii HOM05D002707 ORTHO05D002925 6.1e-12 74.3 58 55.2
Os02g0221800 Oryza sativa ssp. japonica HOM05D002707 ORTHO05D002925 8.0e-12 73.9 167 32.3
TAR629G2454 Trochodendron aralioides HOM05D002707 ORTHO05D002925 1.4e-11 73.2 45 68.9
Sed0008995 Sechium edule HOM05D002707 ORTHO05D002925 1.8e-11 72.8 173 30.1
TPR.G32490 Trifolium pratense HOM05D002707 ORTHO05D002925 2.3e-11 72.4 115 44.3
TPR.G24568 Trifolium pratense HOM05D002707 ORTHO05D002925 2.0e-10 69.3 44 65.9
ClCG02G014220 Citrullus lanatus HOM05D002707 ORTHO05D002925 2.6e-10 68.9 173 29.5
Oeu027927.3 Olea europaea HOM05D002707 ORTHO05D002925 7.5e-10 67.4 211 27.5
Actinidia04358 Actinidia chinensis HOM05D002707 ORTHO05D002925 9.8e-10 67.0 170 30.6
Migut.O00946 Erythranthe guttata HOM05D002707 ORTHO05D002925 9.8e-10 67.0 41 73.2
CsaV3_UNG101750 Cucumis sativus L. HOM05D002707 ORTHO05D002925 1.3e-09 66.6 44 63.6
CsaV3_UNG110810 Cucumis sativus L. HOM05D002707 ORTHO05D002925 1.3e-09 66.6 44 63.6
Haze_18471 Corylus avellana HOM05D002707 ORTHO05D002925 1.7e-09 66.2 76 48.7
Nn1g00318 Nelumbo nucifera HOM05D002707 ORTHO05D002925 2.2e-09 65.9 71 45.1
Nitab4.5_0000146g0100 Nicotiana tabacum HOM05D002707 ORTHO05D002925 2.2e-09 65.9 44 61.4
Nn3g18570 Nelumbo nucifera HOM05D002707 ORTHO05D002925 6.3e-09 64.3 44 61.4
Nitab4.5_0003448g0050 Nicotiana tabacum HOM05D002707 ORTHO05D002925 6.3e-09 64.3 44 59.1
MBI01_g20331_MAGBIO Magnolia biondii HOM05D002707 ORTHO05D002925 8.3e-09 63.9 39 66.7
SEGI_38207 Sequoiadendron giganteum HOM05D002707 ORTHO05D002925 1.4e-08 63.2 39 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3643 Anthoceros agrestis HOM05D002707 ORTHO05D002925 9.2e-08 60.5 62 46.8
Pp3c23_22490 Physcomitrium patens HOM05D002707 ORTHO05D002925 2.0e-07 59.3 53 45.3
Pp3c20_720 Physcomitrium patens HOM05D002707 ORTHO05D002925 2.7e-07 58.9 58 44.8
Pp3c20_727 Physcomitrium patens HOM05D002707 ORTHO05D002925 2.7e-07 58.9 58 44.8
TAR636G3646 Trochodendron aralioides HOM05D002707 ORTHO05D002925 2.7e-07 58.9 167 28.1
MD07G1294200 Malus domestica HOM05D002707 ORTHO05D002925 4.5e-07 58.2 75 40.0
MD01G1223500 Malus domestica HOM05D002707 ORTHO05D002925 1.0e-06 57.0 75 37.3
Manes.05G191700 Manihot esculenta HOM05D002707 ORTHO05D002925 1.3e-06 56.6 71 42.3
Zm00001eb357210 Zea mays HOM05D002707 ORTHO05D002925 2.3e-06 55.8 45 55.6
Sed0001018 Sechium edule HOM05D002707 ORTHO05D002925 2.9e-06 55.5 90 34.4
Sopen06g018090 Solanum pennellii HOM05D002707 ORTHO05D002925 3.8e-06 55.1 72 40.3
PGSC0003DMG400019596 Solanum tuberosum HOM05D002707 ORTHO05D002925 3.8e-06 55.1 72 40.3
BolC1t02374H Brassica oleracea HOM05D002707 ORTHO05D002925 5.0e-06 54.7 88 34.1
Potri.015G010300 Populus trichocarpa HOM05D002707 ORTHO05D002925 5.0e-06 54.7 71 39.4
Oeu041072.2 Olea europaea HOM05D000645 ORTHO05D000494 6.6e-06 54.3 94 37.2


User provided reference genes

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