Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25317_v3 Cicer arietinum L. HOM05D006174 ORTHO05D007987 1.3e-209 733.0 443 100.0
TPR.G8620 Trifolium pratense HOM05D006174 ORTHO05D007987 1.7e-151 540.0 445 73.9
Psat1g032920 Pisum sativum HOM05D006174 ORTHO05D007987 3.8e-148 528.9 451 72.3
Medtr3g108060 Medicago truncatula HOM05D006174 ORTHO05D007987 9.4e-147 524.2 445 72.8
Lj1g0022003 Lotus japonicus HOM05D006174 ORTHO05D007987 1.6e-106 390.6 456 61.6
Lalb_Chr17g0343621 Lupinus albus HOM05D006174 ORTHO05D007987 4.8e-98 362.5 458 54.8
arahy.Tifrunner.gnm1.ann1.I3T0B4 Arachis hypogaea HOM05D006174 ORTHO05D007987 1.1e-97 361.3 449 59.5
arahy.Tifrunner.gnm1.ann1.9UW3CC Arachis hypogaea HOM05D006174 ORTHO05D007987 5.8e-96 355.5 449 59.0
Phvul.001G090600 Phaseolus vulgaris HOM05D006174 ORTHO05D007987 1.9e-94 350.5 450 58.2
QL09p033206 Quercus lobata HOM05D006174 ORTHO05D007987 3.0e-92 343.2 450 56.9
Glyma.19G099200 Glycine max HOM05D006174 ORTHO05D007987 4.8e-90 335.9 461 59.0
Manes.18G080300 Manihot esculenta HOM05D006174 ORTHO05D007987 4.8e-90 335.9 443 56.9
CANSAT56G3042 Cannabis sativa HOM05D006174 ORTHO05D007987 4.0e-89 332.8 453 51.0
RcHm_v2.0_Chr4g0420811 Rosa chinensis HOM05D006174 ORTHO05D007987 5.3e-89 332.4 456 53.5
CsaV3_5G026160 Cucumis sativus L. HOM05D006174 ORTHO05D007987 2.6e-88 330.1 449 54.1
Cfa018561 Carpinus fangiana HOM05D006174 ORTHO05D007987 4.5e-88 329.3 458 51.1
Sed0011313 Sechium edule HOM05D006174 ORTHO05D007987 4.5e-88 329.3 443 52.1
MELO3C025482.2 Cucumis melo HOM05D006174 ORTHO05D007987 5.8e-88 328.9 448 52.0
Atru.chr13.1536 Acer truncatum HOM05D006174 ORTHO05D007987 7.6e-88 328.6 447 50.3
CiPaw.15G033800 Carya illinoinensis HOM05D006174 ORTHO05D007987 2.9e-87 326.6 457 53.8
AUR62041512 Chenopodium quinoa HOM05D006174 ORTHO05D007987 2.9e-87 326.6 449 53.0
PGR044G0496 Punica granatum HOM05D006174 ORTHO05D007987 2.9e-87 326.6 450 53.6
ClCG11G015920 Citrullus lanatus HOM05D006174 ORTHO05D007987 4.9e-87 325.9 448 54.7
Thecc.08G130300 Theobroma cacao HOM05D006174 ORTHO05D007987 4.9e-87 325.9 440 53.2
CAN.G1352.3 Capsicum annuum HOM05D006174 ORTHO05D007987 2.4e-86 323.6 448 53.8
CARHR070890 Cardamine hirsuta HOM05D006174 ORTHO05D007987 3.2e-86 323.2 447 55.3
Prupe.1G492400 Prunus persica HOM05D006174 ORTHO05D007987 3.2e-86 323.2 453 53.4
FAN27G1425 Fragaria x ananassa HOM05D006174 ORTHO05D007987 9.3e-86 321.6 444 50.7
Gohir.A06G046700 Gossypium hirsutum HOM05D006174 ORTHO05D007987 1.2e-85 321.2 441 55.6
VMungo1080G1789 Vigna mungo HOM05D006174 ORTHO05D007987 1.2e-85 321.2 445 56.0
Cpa.g.sc64.130 Carica papaya HOM05D006174 ORTHO05D007987 1.6e-85 320.9 440 53.9
Ah.12g055480 Amaranthus hybridus HOM05D006174 ORTHO05D007987 2.1e-85 320.5 449 55.2
Aqoxy3G03207 Aquilegia oxysepala HOM05D006174 ORTHO05D007987 2.7e-85 320.1 440 50.5
C01p23850 Brassica napus HOM05D006174 ORTHO05D007987 2.7e-85 320.1 447 54.6
Gorai.010G052600 Gossypium raimondii HOM05D006174 ORTHO05D007987 2.7e-85 320.1 439 55.6
FAN20G1065 Fragaria x ananassa HOM05D006174 ORTHO05D007987 4.6e-85 319.3 444 53.8
Carub.0002s2430 Capsella rubella HOM05D006174 ORTHO05D007987 1.0e-84 318.2 452 53.5
FAN24G3105 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.0e-84 318.2 444 51.4
MD00G1030400 Malus domestica HOM05D006174 ORTHO05D007987 1.0e-84 318.2 458 53.1
BcaB05g25044 Brassica carinata HOM05D006174 ORTHO05D007987 1.3e-84 317.8 452 53.3
FvH4_2g27550 Fragaria vesca HOM05D006174 ORTHO05D007987 2.3e-84 317.0 444 53.2
Thhalv10019853m.g Eutrema salsugineum HOM05D006174 ORTHO05D007987 3.0e-84 316.6 447 54.4
Gohir.D06G047100 Gossypium hirsutum HOM05D006174 ORTHO05D007987 3.0e-84 316.6 439 55.1
Ciclev10003743m.g Citrus clementina HOM05D006174 ORTHO05D007987 3.9e-84 316.2 455 53.2
AT1G77405 Arabidopsis thaliana HOM05D006174 ORTHO05D007987 5.1e-84 315.8 447 54.6
TWI34G0515 Tripterygium wilfordii HOM05D006174 ORTHO05D007987 5.1e-84 315.8 446 55.6
Oeu001538.1 Olea europaea HOM05D006174 ORTHO05D007987 6.7e-84 315.5 443 49.7
FAN15G2863 Fragaria x ananassa HOM05D006174 ORTHO05D007987 8.7e-84 315.1 444 53.2
Eucgr.F04334 Eucalyptus grandis HOM05D006174 ORTHO05D007987 1.1e-83 314.7 443 49.4
BcaC09g50568 Brassica carinata HOM05D006174 ORTHO05D007987 1.5e-83 314.3 447 54.1
A01p18900 Brassica napus HOM05D006174 ORTHO05D007987 1.5e-83 314.3 447 54.8
BolC1t02330H Brassica oleracea HOM05D006174 ORTHO05D007987 1.5e-83 314.3 447 54.1
Sp5g32560 Schrenkiella parvula HOM05D006174 ORTHO05D007987 1.5e-83 314.3 444 55.0
AL2G37610 Arabidopsis lyrata HOM05D006174 ORTHO05D007987 1.9e-83 313.9 447 55.0
Nitab4.5_0005499g0020 Nicotiana tabacum HOM05D006174 ORTHO05D007987 1.9e-83 313.9 451 53.0
BraA01t01831Z Brassica rapa HOM05D006174 ORTHO05D007987 9.6e-83 311.6 447 54.6
Duzib093G0805 Durio zibethinus HOM05D006174 ORTHO05D007987 3.7e-82 309.7 446 54.3
CSS0047085 Camellia sinensis var. sinensis HOM05D006174 ORTHO05D007987 6.2e-82 308.9 449 53.2
PGSC0003DMG400006019 Solanum tuberosum HOM05D006174 ORTHO05D007987 6.2e-82 308.9 439 53.8
vmacro17639 Vaccinium macrocarpon HOM05D006174 ORTHO05D007987 6.2e-82 308.9 447 51.0
Sc14g0003020 Simmondsia chinensis HOM05D006174 ORTHO05D007987 8.1e-82 308.5 439 51.3
TAR336G0003 Trochodendron aralioides HOM05D006174 ORTHO05D007987 1.4e-81 307.8 448 53.1
Nitab4.5_0000111g0120 Nicotiana tabacum HOM05D006174 ORTHO05D007987 1.8e-81 307.4 454 52.6
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 3.1e-81 306.6 440 51.6
Nn8g40873 Nelumbo nucifera HOM05D006174 ORTHO05D007987 5.3e-81 305.8 445 53.5
SalBow2G2495 Salvia bowleyana HOM05D006174 ORTHO05D007987 6.9e-81 305.4 442 54.5
Lsat_1_v5_gn_4_117540 Lactuca sativa HOM05D006174 ORTHO05D007987 9.0e-81 305.1 456 52.4
Nn2g10369 Nelumbo nucifera HOM05D006174 ORTHO05D007987 1.5e-80 304.3 445 54.2
EL10Ac5g12247 Beta vulgaris HOM05D006174 ORTHO05D007987 7.6e-80 302.0 442 51.4
Sopen08g010060 Solanum pennellii HOM05D006174 ORTHO05D007987 2.2e-79 300.4 439 52.8
Solyc08g029150.3 Solanum lycopersicum HOM05D006174 ORTHO05D007987 2.9e-79 300.1 441 52.6
Dinv14652 Davidia involucrata HOM05D006174 ORTHO05D007987 6.5e-79 298.9 446 49.3
Peaxi162Scf00310g00046 Petunia axillaris HOM05D006174 ORTHO05D007987 1.1e-78 298.1 448 52.9
Actinidia21299 Actinidia chinensis HOM05D006174 ORTHO05D007987 1.4e-78 297.7 441 49.2
PSO832G2909 Papaver somniferum HOM05D006174 ORTHO05D007987 3.2e-78 296.6 449 48.8
BcaC03g15734 Brassica carinata HOM05D006174 ORTHO05D007987 5.5e-78 295.8 445 44.3
SHI21567 Sapria himalayana HOM05D006174 ORTHO05D007987 7.1e-78 295.4 429 50.6
AUR62031996 Chenopodium quinoa HOM05D006174 ORTHO05D007987 2.1e-77 293.9 431 52.2
ECA232G2008 Erigeron canadensis HOM05D006174 ORTHO05D007987 7.9e-77 292.0 445 50.3
HanXRQChr11g0326181 Helianthus annuus HOM05D006174 ORTHO05D007987 1.0e-76 291.6 447 49.9
Migut.N03269 Erythranthe guttata HOM05D006174 ORTHO05D007987 2.3e-76 290.4 444 51.6
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.5e-75 287.7 451 43.5
Potri.002G080300 Populus trichocarpa HOM05D006174 ORTHO05D007987 1.3e-74 284.6 444 51.6
THA.LOC104800212 Tarenaya hassleriana HOM05D006174 ORTHO05D007987 2.8e-74 283.5 439 51.5
Aa31LG4G7430 Aethionema arabicum HOM05D006174 ORTHO05D007987 1.4e-73 281.2 453 49.7
ATR0751G052 Amborella trichopoda HOM05D006174 ORTHO05D007987 1.5e-72 277.7 411 47.2
DCAR_014377 Daucus carota HOM05D006174 ORTHO05D007987 5.8e-72 275.8 440 48.4
QL09p033332 Quercus lobata HOM05D006174 ORTHO05D007987 1.7e-71 274.2 321 58.6
SGA_v2.0_scaffold75G24945 Striga asiatica HOM05D006174 ORTHO05D007987 1.7e-71 274.2 443 52.1
Rhsim08G0141900 Rhododendron simsii HOM05D006174 ORTHO05D007987 2.2e-71 273.9 340 41.8
Sabra05G0137100 Salix brachista HOM05D006174 ORTHO05D007987 1.4e-70 271.2 437 50.8
GSVIVG01008474001 Vitis vinifera HOM05D006174 ORTHO05D007987 4.2e-70 269.6 441 41.3
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 6.1e-69 265.8 436 43.8
HPP92_023560 Vanilla planifolia HOM05D006174 ORTHO05D007987 4.8e-66 256.1 440 44.5
PGSC0003DMG400014838 Solanum tuberosum HOM05D006174 ORTHO05D007987 8.2e-66 255.4 321 58.9
PGSC0003DMG400029178 Solanum tuberosum HOM05D006174 ORTHO05D007987 1.1e-65 255.0 321 59.2
Cc10_g12420 Coffea canephora HOM05D006174 ORTHO05D007987 2.6e-64 250.4 319 57.1
EL10Ac3g06597 Beta vulgaris HOM05D006174 ORTHO05D007987 3.1e-57 226.9 319 55.2
HPP92_023516 Vanilla planifolia HOM05D006174 ORTHO05D007987 1.2e-56 224.9 327 47.7
arahy.Tifrunner.gnm1.ann1.DV4E2P Arachis hypogaea HOM05D006174 ORTHO05D007987 1.5e-56 224.6 303 56.8
Nn7g36521 Nelumbo nucifera HOM05D006174 ORTHO05D007987 5.0e-55 219.5 388 47.4
Lj7C346T1 Lonicera japonica HOM05D006174 ORTHO05D007987 4.1e-49 199.9 440 34.1
Zm00001eb056380 Zea mays HOM05D006174 ORTHO05D007987 5.0e-47 193.0 426 46.7
Os03g0736200 Oryza sativa ssp. japonica HOM05D006174 ORTHO05D007987 1.1e-46 191.8 340 51.2
CAN.G1352.7 Capsicum annuum HOM05D006174 ORTHO05D007987 1.9e-46 191.0 248 55.6
Glyma.16G052400 Glycine max HOM05D006174 ORTHO05D007987 4.7e-45 186.4 210 71.9
Actinidia28258 Actinidia chinensis HOM05D006174 ORTHO05D007987 8.0e-45 185.7 406 43.3
SEGI_34053 Sequoiadendron giganteum HOM05D006174 ORTHO05D007987 4.0e-44 183.3 218 44.5
CAN.G1503.13 Capsicum annuum HOM05D006174 ORTHO05D007987 1.5e-43 181.4 278 39.6
Haze_17519 Corylus avellana HOM05D006174 ORTHO05D007987 1.5e-43 181.4 463 31.3
SGA_v2.0_scaffold154G37185 Striga asiatica HOM05D006174 ORTHO05D007987 3.0e-36 157.1 306 34.3
BolC3t19678H Brassica oleracea HOM05D006174 ORTHO05D007987 4.0e-36 156.8 186 46.8
Sabra02G0062800 Salix brachista HOM05D006174 ORTHO05D007987 1.3e-34 151.8 316 44.9
COL.COLO4_03953 Corchorus olitorius HOM05D006174 ORTHO05D007987 1.1e-25 122.1 449 26.7
C03p74150 Brassica napus HOM05D006174 ORTHO05D007987 1.4e-25 121.7 219 37.0
BcaC01g01605 Brassica carinata HOM05D006174 ORTHO05D027324 3.0e-20 104.0 158 62.7
A01p18890 Brassica napus HOM05D006174 ORTHO05D007987 2.0e-19 101.3 200 37.0
BraA01t01830Z Brassica rapa HOM05D006174 ORTHO05D007987 2.0e-19 101.3 200 37.0
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 4.1e-17 93.6 180 36.1
C03p73930 Brassica napus HOM05D000313 ORTHO05D018464 1.5e-14 85.1 50 72.0
C03p73970 Brassica napus HOM05D006174 ORTHO05D027324 1.5e-14 85.1 50 72.0
C03p74000 Brassica napus HOM05D006174 ORTHO05D027324 1.5e-14 85.1 50 72.0
SGA_v2.0_scaffold28G11981 Striga asiatica HOM05D006174 ORTHO05D007987 1.7e-10 71.6 125 36.0
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 1.4e-09 68.6 206 24.3
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 3.2e-09 67.4 206 23.8
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 4.1e-09 67.0 311 28.3
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 6.0e-08 63.2 145 30.3
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 7.8e-08 62.8 126 31.0
QL08p056726 Quercus lobata HOM05D002453 ORTHO05D008746 7.8e-08 62.8 142 31.0
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 1.0e-07 62.4 207 24.2
QL09p032747 Quercus lobata HOM05D000424 ORTHO05D000355 1.0e-07 62.4 202 22.8
AT1G26500 Arabidopsis thaliana HOM05D005622 ORTHO05D002854 1.3e-07 62.0 351 22.2
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 2.3e-07 61.2 126 28.6
AL1G39240 Arabidopsis lyrata HOM05D005622 ORTHO05D002854 3.9e-07 60.5 238 25.6
Gohir.D03G069200 Gossypium hirsutum HOM05D000424 ORTHO05D000355 5.0e-07 60.1 206 20.9
Oeu051493.1 Olea europaea HOM05D003039 ORTHO05D009478 5.0e-07 60.1 271 21.8
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.6e-07 59.3 139 29.5
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 8.6e-07 59.3 137 26.3
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 8.6e-07 59.3 140 32.9
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 1.5e-06 58.5 119 32.8
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 1.5e-06 58.5 137 26.3
CANSAT80G0566 Cannabis sativa HOM05D003039 ORTHO05D009478 1.9e-06 58.2 218 22.5
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 2.5e-06 57.8 137 26.3
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 3.3e-06 57.4 136 26.5
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 3.3e-06 57.4 294 23.1
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 4.3e-06 57.0 214 23.4
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 7.3e-06 56.2 257 23.3
Actinidia25867 Actinidia chinensis HOM05D003039 ORTHO05D009478 9.5e-06 55.8 206 20.9
AUR62000309 Chenopodium quinoa HOM05D006174 ORTHO05D007987 9.5e-06 55.8 124 31.5
Duzib160G0410 Durio zibethinus HOM05D000891 ORTHO05D000761 9.5e-06 55.8 139 30.2
Gorai.007G120700 Gossypium raimondii HOM05D003039 ORTHO05D009478 9.5e-06 55.8 206 22.3
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 9.5e-06 55.8 258 24.4
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 9.5e-06 55.8 258 24.4


User provided reference genes

Program Settings