Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 6049.5 3000 100.0
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 5356.2 2855 92.4
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 5354.3 2861 92.2
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 5331.5 2887 91.1
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 5038.4 2861 86.6
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 4953.3 2857 85.2
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 4652.4 2679 85.1
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 4145.1 2872 71.1
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 4084.6 2873 69.5
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 4068.1 2894 69.4
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 4065.8 2860 69.5
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 4061.9 2999 67.8
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 4052.3 2873 68.7
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 4050.7 2885 69.5
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 4024.6 2895 68.6
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 4019.9 2868 68.1
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 4014.9 2895 68.5
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 4011.5 2871 68.9
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 4009.5 2872 68.7
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 4000.7 2868 67.9
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 3963.3 3239 62.9
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 3922.5 2865 67.4
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 3905.5 2874 66.6
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3904.4 2864 66.9
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 3895.9 2874 66.8
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 3888.2 2869 67.1
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3867.4 2868 66.4
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 3835.4 2868 66.0
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 3826.9 2864 66.1
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 3822.7 2866 65.3
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 3820.4 2866 65.5
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 3811.2 2945 64.1
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 3809.2 2872 64.6
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 3779.6 2864 64.5
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 3770.7 2858 65.0
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 3765.3 2871 64.7
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 3741.4 2949 63.6
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 3731.0 2869 64.0
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 3726.4 2886 63.7
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 3719.1 2862 63.5
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 3714.9 2864 63.6
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 3714.1 2860 63.3
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 3712.9 2862 63.4
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 3712.5 2860 63.3
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 3709.8 2860 63.4
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 3706.8 2860 63.4
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 3706.8 2860 63.3
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 3703.3 2864 63.5
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 3695.2 2864 63.4
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 3693.3 2792 64.9
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 3691.4 2876 62.7
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 3678.3 2864 63.6
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 3669.0 2864 63.6
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 3663.2 2860 62.7
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 3649.8 2873 62.5
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 3627.4 2862 62.4
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 3619.7 2867 62.7
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 3617.0 2861 62.0
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 3616.6 2857 62.5
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3616.6 2868 63.5
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 3614.3 2861 62.0
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 3611.6 2861 62.7
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 3603.1 2864 62.8
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 3599.3 2858 61.9
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 3591.6 2858 62.1
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 3542.7 2569 68.2
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 3491.0 2916 59.5
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 3470.2 2359 72.1
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 3437.5 2872 60.1
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 3430.2 2515 67.0
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 3423.6 2545 66.1
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 3315.4 2859 62.0
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 3258.4 2858 57.3
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 3153.6 2356 65.4
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3078.1 2464 61.1
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 2967.6 2859 55.3
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 2930.2 1764 82.4
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2929.0 2359 60.9
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2919.0 2864 53.1
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2914.8 2858 53.0
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 2801.5 2355 58.8
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 2793.1 2358 59.1
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 2747.6 2924 48.8
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 2660.9 2879 47.7
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 2647.8 2898 47.8
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 2544.2 2741 49.6
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 2528.1 2272 55.1
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 2427.5 2869 44.8
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 2333.9 1698 67.3
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 2201.4 1580 67.8
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1514.6 1123 66.5
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1412.5 3233 31.3
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1236.9 1097 58.2
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 2.3e-289 1000.7 1348 43.6
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.4e-286 991.5 4050 24.8
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 6.4e-271 939.5 644 70.5
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.6e-266 923.7 700 66.4
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 5.2e-265 919.8 583 78.4
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.3e-220 772.3 876 47.9
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.3e-215 755.7 1175 38.5
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.0e-204 718.0 1868 30.7
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 7.0e-193 680.2 361 90.0
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 1.1e-182 646.4 518 63.1
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.8e-178 631.7 623 50.1
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 9.1e-177 626.7 352 87.8
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 2.9e-162 578.6 508 59.1
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 1.3e-159 569.7 329 86.6
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 5.8e-139 501.1 596 47.7
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.6e-139 500.7 334 74.0
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 6.6e-135 487.6 487 50.1
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 9.6e-134 483.8 832 37.7
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 4.8e-133 481.5 320 72.8
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.4e-121 443.4 267 80.9
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.2e-96 360.5 455 46.4
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 2.8e-93 349.4 240 69.2
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 1.0e-90 340.9 239 65.7
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.8e-79 303.5 206 69.4
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 2.3e-79 303.1 233 63.9
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 2.8e-77 296.2 310 53.5
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 1.9e-73 283.5 319 51.1
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 1.6e-72 280.4 522 36.6
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 4.7e-72 278.9 223 57.8
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 5.9e-67 261.9 204 68.6
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 2.3e-63 250.0 164 73.2
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 4.9e-61 242.3 164 75.6
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 2.3e-47 196.8 121 81.0
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 4.4e-46 192.6 115 84.3
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 8.3e-45 188.3 109 85.3
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 3.0e-42 179.9 107 83.2
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 8.6e-42 178.3 113 79.6
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.1e-41 177.9 157 54.8
Ca_25296_v3 Cicer arietinum L. HOM05D001168 ORTHO05D001044 2.1e-40 173.7 142 70.4
Ca_19993_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 8.9e-39 168.3 118 83.1
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 2.6e-38 166.8 106 77.4
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.2e-37 163.7 111 72.1
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 4.3e-33 149.4 92 78.3
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 6.6e-26 125.6 150 47.3
Ca_14894_v3 Cicer arietinum L. HOM05D001168 ORTHO05D001044 2.4e-23 117.1 118 64.4
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 4.0e-23 116.3 75 74.7
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 4.4e-22 112.8 59 84.7
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 3.2e-20 106.7 62 83.9
Oeu014156.1 Olea europaea HOM05D003919 ORTHO05D036952 6.0e-19 102.4 157 40.1
Ca_14758_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.0e-18 101.7 118 53.4
Lsat_1_v5_gn_5_23900 Lactuca sativa HOM05D003509 ORTHO05D004205 7.3e-17 95.5 359 25.3
FAN08G1746 Fragaria x ananassa HOM05D003919 ORTHO05D005006 9.0e-15 88.6 83 61.4
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.2e-14 88.2 138 43.5
FvH4_5g39264 Fragaria vesca HOM05D000731 ORTHO05D004906 3.4e-14 86.7 50 90.0
Ca_23900_v3 Cicer arietinum L. HOM05D004650 ORTHO05D005715 5.8e-14 85.9 85 56.5
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.4e-12 81.3 46 82.6
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 7.1e-12 79.0 75 50.7
TPR.G3476 Trifolium pratense HOM05D004650 ORTHO05D005715 2.1e-11 77.4 84 52.4
Psat0s760g0040 Pisum sativum HOM05D003919 ORTHO05D004906 4.6e-11 76.3 38 84.2
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 3.9e-10 73.2 777 22.7
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 6.7e-10 72.4 37 89.2
TPR.G23542 Trifolium pratense HOM05D004650 ORTHO05D005715 5.6e-09 69.3 136 38.2
SEGI_31724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 9.6e-09 68.6 410 22.7
Glyma.12G236300 Glycine max HOM05D004650 ORTHO05D005715 2.1e-08 67.4 95 44.2
Glyma.13G201700 Glycine max HOM05D004650 ORTHO05D005715 3.6e-08 66.6 95 45.3
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 4.8e-08 66.2 50 66.0
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 6.2e-08 65.9 30 96.7
Psat2g040720 Pisum sativum HOM05D004650 ORTHO05D005715 8.1e-08 65.5 119 41.2
Lsat_1_v5_gn_9_102121 Lactuca sativa HOM05D000669 ORTHO05D000679 1.4e-07 64.7 71 43.7
Manes.04G086301 Manihot esculenta HOM05D004650 ORTHO05D005715 2.4e-07 63.9 71 52.1
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 3.1e-07 63.5 457 23.2
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 4.0e-07 63.2 308 22.4
Phvul.011G210900 Phaseolus vulgaris HOM05D004650 ORTHO05D005715 5.3e-07 62.8 94 45.7
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.9e-07 62.4 154 39.6
Medtr1g080390 Medicago truncatula HOM05D004650 ORTHO05D005715 1.2e-06 61.6 95 42.1
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 1.5e-06 61.2 393 25.2
Nitab4.5_0023098g0010 Nicotiana tabacum HOM05D003919 ORTHO05D004906 5.8e-06 59.3 458 22.1
COL.COLO4_26001 Corchorus olitorius HOM05D004650 ORTHO05D005715 9.9e-06 58.5 71 47.9


User provided reference genes

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