Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.0e-114 415.2 290 100.0
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 7.2e-95 351.3 290 77.6
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.3e-93 346.3 287 87.8
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.0e-93 345.9 289 84.1
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.2e-91 339.7 290 80.0
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.3e-90 335.1 288 79.5
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 3.0e-85 319.3 288 73.6
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 5.7e-84 315.1 287 76.0
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 4.8e-83 312.0 283 71.4
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 8.2e-83 311.2 287 75.6
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 2.6e-81 306.2 283 69.3
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.1e-78 296.6 223 89.7
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 2.7e-78 296.2 287 64.5
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 2.6e-76 289.7 290 71.4
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 9.7e-76 287.7 274 65.7
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 3.7e-75 285.8 293 57.3
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.8e-74 283.5 288 56.6
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 2.7e-73 279.6 288 55.9
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 2.7e-73 279.6 291 63.6
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 4.2e-71 272.3 294 68.0
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 5.5e-71 271.9 288 57.6
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.0e-69 267.7 284 67.3
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.2e-68 264.2 289 54.0
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 4.4e-68 262.3 299 64.2
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 4.8e-67 258.8 275 71.6
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.4e-66 256.5 290 60.7
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 3.1e-66 256.1 251 68.5
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.6e-65 253.8 293 60.4
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 4.5e-65 252.3 279 58.8
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.0e-64 251.1 282 68.1
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.2e-64 250.0 292 51.4
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 2.9e-64 249.6 293 52.2
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.5e-63 246.5 276 55.1
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.2e-63 245.7 291 52.2
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 7.2e-63 245.0 279 53.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 9.5e-63 244.6 291 52.2
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 2.1e-62 243.4 288 57.6
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 3.6e-62 242.7 266 62.8
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.0e-61 241.1 257 68.9
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.0e-61 241.1 284 52.5
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.0e-61 239.2 256 55.9
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 4.0e-61 239.2 293 52.2
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.2e-61 238.8 218 68.8
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 6.8e-61 238.4 295 50.5
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.8e-61 238.0 218 68.3
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.8e-61 238.0 218 68.8
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.5e-60 237.3 244 54.9
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 2.0e-60 236.9 296 57.8
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.0e-60 236.9 218 69.3
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.6e-60 236.5 218 64.7
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.4e-60 236.1 218 68.3
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.4e-60 236.1 218 68.3
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 4.4e-60 235.7 284 56.7
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.4e-60 235.7 218 67.9
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 9.8e-60 234.6 299 57.2
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.2e-59 233.4 300 56.3
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 4.9e-59 232.3 290 52.1
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 6.3e-59 231.9 280 52.9
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 8.3e-59 231.5 294 51.0
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 8.3e-59 231.5 199 62.3
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.1e-58 231.1 252 54.0
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.1e-58 231.1 270 61.1
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-58 231.1 298 48.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.1e-58 231.1 293 48.1
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.4e-58 228.8 234 57.7
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 5.4e-58 228.8 249 60.6
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 7.0e-58 228.4 281 59.8
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 7.0e-58 228.4 248 64.9
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 9.2e-58 228.0 289 58.5
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 7.8e-57 224.9 296 49.7
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.7e-56 223.8 289 52.9
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.7e-56 223.8 246 54.5
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.9e-56 223.0 291 54.0
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 2.9e-56 223.0 289 52.6
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 5.0e-56 222.2 289 53.3
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-55 220.7 291 62.2
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.5e-55 220.7 291 62.2
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.9e-55 220.3 288 53.5
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 1.9e-55 220.3 302 50.0
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 3.3e-55 219.5 289 54.0
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 5.6e-55 218.8 268 56.3
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 7.3e-55 218.4 290 60.7
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 9.5e-55 218.0 308 49.0
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.6e-54 217.2 295 52.9
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.6e-54 217.2 295 52.9
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.6e-54 217.2 295 52.9
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.6e-54 217.2 258 58.1
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.1e-54 216.9 261 52.1
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.1e-54 216.9 242 53.3
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 2.8e-54 216.5 268 56.0
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 3.6e-54 216.1 288 52.1
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.3e-53 213.4 240 59.2
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 3.0e-53 213.0 202 58.4
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 4.0e-53 212.6 284 49.3
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 4.0e-53 212.6 269 54.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.2e-53 212.2 263 55.1
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-52 211.1 217 62.2
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.5e-52 210.7 265 48.3
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.5e-52 210.7 266 54.1
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 3.4e-52 209.5 263 56.3
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 8.3e-51 204.9 296 45.9
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.1e-50 204.5 289 46.7
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.1e-50 204.5 295 46.1
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.4e-50 204.1 256 56.2
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.8e-50 203.8 217 60.8
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.1e-50 202.6 298 52.0
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-49 201.1 301 50.5
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.6e-49 200.7 225 52.9
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 2.7e-49 199.9 265 48.3
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.7e-49 199.9 252 49.6
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.6e-49 199.1 251 48.6
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.9e-49 198.7 237 49.8
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.0e-48 198.0 252 56.7
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.7e-48 197.2 246 50.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.3e-48 196.8 269 50.9
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.0e-48 196.4 246 50.0
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 3.9e-48 196.1 220 54.1
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 8.6e-48 194.9 248 49.6
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.1e-47 194.5 252 48.0
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.3e-47 192.6 291 45.7
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 9.5e-47 191.4 236 58.1
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 8.0e-46 188.3 268 55.6
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 3.1e-45 186.4 288 51.4
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 6.8e-45 185.3 199 61.3
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 1.5e-44 184.1 293 43.7
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.2e-43 180.3 298 49.0
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 6.4e-43 178.7 251 57.4
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 8.3e-43 178.3 251 53.4
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 5.0e-40 169.1 292 42.1
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.5e-39 166.8 182 76.4
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 2.5e-39 166.8 245 46.9
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 7.3e-39 165.2 239 48.1
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 7.3e-39 165.2 201 62.7
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.1e-38 163.7 117 70.9
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 6.2e-38 162.2 148 75.0
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-37 161.0 195 59.0
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-37 161.0 189 68.8
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 9.8e-36 154.8 246 47.6
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.7e-35 154.1 224 41.5
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 2.4e-34 150.2 124 57.3
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.4e-34 149.1 242 45.0
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 9.2e-34 148.3 202 55.4
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.6e-33 146.0 121 62.0
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.7e-32 144.1 133 58.6
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.6e-30 137.5 215 41.9
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.8e-29 134.0 252 53.2
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.2e-28 131.3 294 39.5
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.5e-28 131.0 126 56.3
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.3e-27 127.9 204 39.7
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.2e-25 121.3 167 46.7
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.3e-24 117.1 258 34.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.2e-22 111.3 246 36.2
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 3.6e-22 109.8 181 38.1
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 8.1e-22 108.6 126 54.0
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.2e-21 105.9 99 60.6
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 5.2e-21 105.9 265 34.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.2e-17 94.7 83 60.2
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.0e-17 92.4 73 69.9
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.9e-15 87.4 144 60.4
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 3.3e-15 86.7 88 48.9
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 7.3e-15 85.5 65 67.7
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 7.3e-15 85.5 76 63.2
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 7.3e-15 85.5 76 63.2
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 4.8e-14 82.8 232 33.2
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 6.2e-14 82.4 79 60.8
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 6.2e-14 82.4 211 28.0
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.1e-13 81.6 167 32.9
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.8e-13 80.9 167 35.9
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.0e-12 77.4 53 71.7
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.2e-11 73.9 82 57.3
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 2.2e-11 73.9 72 58.3
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.2e-10 70.1 73 57.5
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 3.0e-08 63.5 51 64.7
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.1e-08 62.8 42 64.3
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.3e-07 60.1 70 57.1


User provided reference genes

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