Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.2e-264 914.1 439 100.0
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.8e-260 900.6 433 100.0
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 1.2e-226 789.6 422 89.1
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 3.3e-224 781.6 422 88.2
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 2.2e-220 768.8 421 87.6
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 5.2e-214 747.7 422 83.6
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 3.3e-208 728.4 422 81.5
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 1.7e-204 716.1 422 80.1
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 9.2e-203 710.3 426 79.3
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 2.9e-196 688.7 392 82.9
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 4.9e-196 688.0 434 77.2
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 6.8e-190 667.5 496 65.9
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 3.8e-188 661.8 427 74.0
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 1.3e-185 653.3 524 62.4
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 4.6e-170 601.7 425 66.8
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 1.3e-169 600.1 425 66.1
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 3.0e-169 599.0 422 67.3
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 3.3e-168 595.5 423 67.6
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.3e-167 593.6 422 66.8
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 2.1e-167 592.8 431 65.9
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.8e-166 589.7 419 65.6
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.5e-165 586.6 423 66.9
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 7.6e-165 584.3 418 66.7
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 7.6e-165 584.3 422 66.4
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.3e-164 583.6 418 66.7
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 2.2e-164 582.8 422 65.4
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.8e-164 582.0 426 65.0
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.1e-162 576.2 425 64.2
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.7e-162 575.9 425 65.2
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 4.6e-162 575.1 429 63.4
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 1.3e-161 573.5 425 64.5
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.3e-161 573.5 423 65.0
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.8e-161 573.2 424 64.4
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.0e-161 572.4 425 64.9
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.0e-161 572.4 425 64.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.7e-161 571.2 424 63.9
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.5e-160 569.3 425 65.6
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 5.6e-160 568.2 450 61.1
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 5.6e-160 568.2 423 64.8
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 1.6e-159 566.6 415 64.6
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.2e-159 564.7 420 64.0
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 3.1e-158 562.4 428 63.1
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 4.0e-158 562.0 422 63.7
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 5.3e-158 561.6 423 65.5
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.2e-157 560.5 426 63.6
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 1.5e-157 560.1 423 62.9
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 2.2e-156 556.2 421 62.7
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 3.8e-156 555.4 421 63.7
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.4e-155 553.5 424 62.0
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 5.5e-155 551.6 420 62.9
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 9.3e-155 550.8 420 62.6
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 2.1e-154 549.7 424 63.2
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 3.5e-154 548.9 423 60.3
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 3.5e-154 548.9 420 62.9
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 4.6e-154 548.5 424 63.2
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.3e-153 546.2 423 62.4
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.1e-152 543.9 427 62.5
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.5e-152 542.7 393 65.6
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 5.7e-152 541.6 427 62.3
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 9.7e-152 540.8 426 62.7
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 3.7e-151 538.9 418 61.7
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 6.3e-151 538.1 422 63.3
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.5e-149 533.5 421 59.4
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 2.6e-149 532.7 424 60.1
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 1.2e-146 523.9 529 52.0
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.2e-146 523.9 427 56.7
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.0e-145 520.8 412 60.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 8.8e-145 517.7 425 58.1
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 5.7e-144 515.0 425 57.4
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.7e-143 513.5 423 57.4
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 5.3e-142 508.4 421 57.5
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.2e-141 507.3 421 57.2
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 2.6e-141 506.1 429 59.0
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.3e-140 503.8 422 57.3
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.7e-140 503.4 421 57.5
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.7e-140 503.4 418 57.9
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 1.4e-139 500.4 431 57.5
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.4e-139 500.4 392 60.5
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 5.5e-139 498.4 419 55.1
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 9.4e-139 497.7 421 57.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 6.1e-138 495.0 422 56.2
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 7.9e-138 494.6 424 57.5
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 7.9e-138 494.6 423 55.6
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.8e-137 493.4 394 59.1
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 2.3e-137 493.0 421 55.8
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.0e-137 492.7 423 55.3
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 5.1e-137 491.9 420 58.3
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 3.3e-136 489.2 435 54.7
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 9.1e-134 481.1 465 51.4
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 1.2e-133 480.7 466 53.9
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.2e-133 480.7 455 52.3
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 1.7e-132 476.9 403 59.1
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 1.1e-131 474.2 426 53.5
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 1.9e-131 473.4 422 53.6
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 3.2e-131 472.6 414 55.1
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 7.2e-131 471.5 424 54.2
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.1e-130 469.9 422 53.8
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 1.0e-129 467.6 422 52.8
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 2.0e-128 463.4 422 53.3
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 9.7e-128 461.1 480 48.5
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 3.7e-127 459.1 422 52.8
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 4.8e-127 458.8 444 51.1
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 6.3e-127 458.4 374 59.6
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 8.2e-127 458.0 422 51.9
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.4e-126 456.4 422 51.2
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.4e-126 456.4 422 51.2
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 2.6e-125 453.0 422 51.2
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 5.9e-125 451.8 464 48.1
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 8.8e-121 438.0 344 61.9
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 8.8e-121 438.0 344 61.9
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.5e-107 394.0 436 45.9
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 2.6e-104 383.3 436 42.7
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.6e-104 383.3 426 45.3
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 2.6e-104 383.3 415 46.0
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.8e-103 379.8 422 47.4
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.6e-96 356.7 234 66.2
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.5e-96 355.1 276 60.1
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.3e-92 344.4 421 44.9
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 5.8e-88 328.9 419 42.2
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 9.2e-86 321.6 161 84.5
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.1e-81 308.1 430 40.0
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.1e-78 296.2 141 88.7
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 6.0e-77 292.4 541 33.8
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 3.9e-76 289.7 174 75.3
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.6e-67 259.2 135 82.2
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 1.3e-55 221.5 121 76.9
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.3e-49 199.5 91 90.1
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.5e-43 181.4 195 45.1
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 2.2e-31 141.0 234 36.3
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.9e-30 137.9 81 72.8
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.7e-27 125.6 73 79.5
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.7e-27 125.6 73 79.5
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.4e-25 121.7 64 81.2
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.9e-24 116.3 98 56.1
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.1e-22 112.1 59 78.0
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 8.8e-20 102.4 66 69.7
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.0e-15 89.0 200 31.0
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.8e-12 78.2 61 63.9
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.7e-11 73.2 74 51.4
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.8e-09 68.2 75 49.3


User provided reference genes

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