Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 9.3e-107 390.2 194 100.0
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.6e-74 283.1 137 97.8
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 6.1e-74 281.2 137 97.1
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.4e-73 280.0 137 96.4
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 1.5e-72 276.6 137 94.9
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 2.8e-71 272.3 137 93.4
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 6.3e-71 271.2 137 92.7
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 8.2e-71 270.8 137 92.7
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 8.2e-71 270.8 137 94.9
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 3.1e-70 268.9 137 91.2
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 3.1e-70 268.9 137 91.2
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 8.5e-68 260.8 137 89.1
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 4.2e-67 258.5 137 89.1
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 4.0e-65 251.9 137 87.6
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 1.3e-63 246.9 137 86.9
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 1.7e-63 246.5 137 85.4
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 3.7e-63 245.4 143 81.1
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 3.7e-63 245.4 151 79.5
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 4.8e-63 245.0 137 83.2
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 6.3e-63 244.6 137 85.4
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-62 243.8 161 72.7
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 1.4e-62 243.4 137 82.5
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.4e-62 243.4 137 86.1
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.4e-62 243.4 137 83.2
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.4e-62 243.4 151 78.1
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.8e-62 243.0 137 83.9
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 1.8e-62 243.0 137 86.1
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 4.1e-62 241.9 151 75.5
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 4.1e-62 241.9 151 75.5
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 7.0e-62 241.1 144 77.8
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.0e-62 241.1 137 85.4
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 9.1e-62 240.7 137 83.2
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.6e-61 240.0 145 80.0
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 1.6e-61 240.0 151 76.2
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 2.0e-61 239.6 137 83.2
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 2.7e-61 239.2 138 80.4
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 2.7e-61 239.2 137 83.2
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 3.5e-61 238.8 150 76.7
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 3.5e-61 238.8 137 82.5
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 3.5e-61 238.8 137 83.9
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 4.5e-61 238.4 137 84.7
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 4.5e-61 238.4 137 81.8
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.7e-61 237.7 137 83.9
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 7.7e-61 237.7 137 83.9
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.7e-60 236.5 151 74.2
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.7e-60 236.5 151 74.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 1.7e-60 236.5 137 81.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 2.2e-60 236.1 137 83.9
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 2.2e-60 236.1 137 80.3
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.2e-60 236.1 160 70.6
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.9e-60 235.7 137 83.2
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 3.8e-60 235.3 150 74.7
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.8e-60 235.3 137 81.0
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 5.0e-60 235.0 137 83.2
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 5.0e-60 235.0 150 76.0
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 6.5e-60 234.6 135 84.4
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 8.5e-60 234.2 150 73.3
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 8.5e-60 234.2 150 74.0
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 1.1e-59 233.8 132 83.3
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.1e-59 233.8 137 81.8
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 1.9e-59 233.0 137 81.8
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.9e-59 233.0 137 80.3
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.9e-59 233.0 139 82.7
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 1.9e-59 233.0 135 80.7
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 3.2e-59 232.3 141 77.3
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.2e-59 231.9 137 81.0
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 7.2e-59 231.1 137 81.0
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 9.4e-59 230.7 143 78.3
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 1.2e-58 230.3 137 81.0
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 1.2e-58 230.3 147 74.8
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 1.6e-58 229.9 137 81.0
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 2.7e-58 229.2 137 80.3
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 3.6e-58 228.8 151 72.8
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 3.6e-58 228.8 144 72.9
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 6.1e-58 228.0 135 79.3
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 6.1e-58 228.0 151 75.5
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 8.0e-58 227.6 135 78.5
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 8.0e-58 227.6 147 72.8
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 8.0e-58 227.6 134 78.4
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.0e-57 227.3 145 73.1
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.0e-57 227.3 145 73.1
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.0e-57 227.3 145 73.1
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 1.0e-57 227.3 145 72.4
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 1.0e-57 227.3 142 76.1
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.4e-57 226.9 145 72.4
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.8e-57 226.5 137 79.6
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 1.8e-57 226.5 134 78.4
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.3e-57 226.1 137 76.6
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 4.0e-57 225.3 145 72.4
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 4.0e-57 225.3 143 77.6
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 1.2e-56 223.8 145 72.4
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.2e-56 223.8 143 74.1
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 2.0e-56 223.0 135 74.8
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 9.8e-56 220.7 150 67.3
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 1.3e-55 220.3 137 77.4
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.3e-55 220.3 137 79.6
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 2.2e-55 219.5 137 73.7
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 3.1e-54 215.7 137 71.5
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 7.0e-54 214.5 135 73.3
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 7.0e-54 214.5 135 73.3
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 1.2e-53 213.8 137 74.5
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.0e-52 210.7 149 70.5
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.0e-52 210.7 168 63.7
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.3e-52 210.3 149 69.8
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 6.1e-50 201.4 146 70.5
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 4.0e-49 198.7 137 68.6
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 5.2e-49 198.4 150 66.7
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 2.9e-47 192.6 125 72.0
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 2.4e-46 189.5 122 72.1
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 1.9e-43 179.9 137 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.6e-42 176.8 137 61.3
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.6e-42 176.8 132 60.6
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 6.2e-42 174.9 132 59.8
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 6.2e-42 174.9 140 60.0
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 8.9e-41 171.0 141 58.9
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.2e-40 170.6 132 59.8
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.2e-40 170.6 132 59.8
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-40 170.2 141 58.9
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-40 170.2 141 58.2
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 5.6e-27 125.2 137 46.0


User provided reference genes

Program Settings