Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 0.0e+00 1282.3 647 100.0
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 8.3e-269 930.2 504 93.8
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 4.1e-268 927.9 504 93.5
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 4.1e-268 927.9 504 93.8
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 6.0e-267 924.1 504 93.3
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 6.0e-267 924.1 504 93.3
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 7.8e-267 923.7 504 93.1
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.3e-266 922.2 504 92.9
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 3.3e-265 918.3 504 92.5
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 7.3e-265 917.1 504 92.7
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.2e-264 916.4 504 91.5
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.6e-264 916.0 504 92.1
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 5.1e-258 894.4 504 89.3
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 1.9e-257 892.5 504 89.5
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 1.9e-257 892.5 504 89.5
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 2.5e-257 892.1 504 88.9
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 1.6e-256 889.4 504 88.7
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 2.8e-256 888.6 504 88.5
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 1.8e-255 885.9 503 89.1
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 2.4e-255 885.6 504 88.3
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 3.1e-255 885.2 504 87.5
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 3.1e-255 885.2 506 88.1
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.5e-254 882.9 504 87.9
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 7.6e-254 880.6 504 88.7
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 7.6e-254 880.6 504 87.5
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 1.3e-253 879.8 504 87.5
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.7e-253 879.4 505 88.1
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.7e-253 879.4 504 88.3
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 3.8e-253 878.2 504 87.7
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 3.8e-253 878.2 504 87.3
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 6.4e-253 877.5 504 87.5
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.1e-252 876.7 504 87.5
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 1.1e-252 876.7 504 87.7
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 3.2e-252 875.2 506 87.4
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 9.3e-252 873.6 504 86.7
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.2e-251 873.2 533 83.7
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 6.0e-251 870.9 533 83.5
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.0e-250 870.2 510 86.1
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.0e-250 870.2 533 83.5
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.3e-250 869.8 556 81.5
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 6.6e-250 867.5 504 86.3
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 1.1e-249 866.7 504 85.7
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 1.5e-249 866.3 505 86.7
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 4.3e-249 864.8 500 88.0
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 9.6e-249 863.6 504 86.9
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.2e-246 856.7 507 85.0
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 3.4e-246 855.1 504 85.1
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 2.9e-245 852.0 504 84.7
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 1.4e-244 849.7 504 84.3
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 3.2e-244 848.6 504 84.7
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 7.1e-244 847.4 525 82.7
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 1.2e-243 846.7 504 84.3
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 4.6e-243 844.7 504 84.3
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 2.3e-242 842.4 504 83.3
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 3.0e-242 842.0 504 83.7
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 6.7e-242 840.9 504 83.7
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 1.9e-241 839.3 504 83.3
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.9e-241 839.3 504 83.9
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.3e-240 836.6 504 83.1
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.4e-239 833.2 504 84.7
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 1.8e-239 832.8 504 82.3
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 5.3e-239 831.2 498 83.7
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 6.9e-239 830.9 504 83.1
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 1.7e-237 826.2 568 75.4
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 8.4e-237 823.9 515 81.4
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 7.1e-236 820.8 515 81.2
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 1.6e-235 819.7 504 80.8
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 7.9e-235 817.4 504 80.8
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.0e-234 817.0 505 82.0
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 6.7e-234 814.3 504 81.5
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 6.7e-234 814.3 504 81.5
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 8.7e-234 813.9 504 81.5
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 8.7e-234 813.9 504 80.6
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 1.1e-233 813.5 504 81.5
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.9e-233 812.8 504 81.3
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 1.9e-233 812.8 504 81.3
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.9e-233 812.8 504 81.3
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 2.5e-233 812.4 504 81.3
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 2.5e-233 812.4 504 81.3
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 2.5e-233 812.4 504 81.3
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 4.3e-233 811.6 504 80.8
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 7.4e-233 810.8 515 80.4
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 4.8e-232 808.1 505 81.4
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 9.0e-231 803.9 504 80.6
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.3e-229 800.0 504 80.4
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 5.7e-225 784.6 504 80.8
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.3e-221 773.5 502 79.5
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 1.2e-219 766.9 504 78.6
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 4.6e-219 765.0 609 67.7
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 6.1e-219 764.6 499 79.4
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.3e-216 756.9 480 80.2
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 3.9e-210 735.3 518 73.9
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 9.7e-209 730.7 560 70.5
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.3e-205 720.3 504 74.6
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 7.2e-204 714.5 506 75.3
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 2.6e-201 706.1 504 69.2
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 2.8e-200 702.6 509 71.5
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 3.1e-199 699.1 508 70.1
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.2e-192 676.4 402 82.8
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.2e-190 670.6 387 87.3
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 2.1e-187 659.8 462 71.4
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 3.0e-186 656.0 504 68.5
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.1e-183 647.5 519 64.4
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.3e-181 639.8 519 63.4
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-180 637.1 519 63.8
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.0e-177 626.7 528 62.9
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.0e-169 600.1 509 60.5
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 7.3e-164 581.6 509 59.7
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.9e-156 557.0 1247 34.1
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 1.6e-134 484.2 255 91.8
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 1.9e-132 477.2 253 91.3
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.4e-130 471.1 537 50.1
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 2.2e-128 463.8 294 79.9
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 4.9e-128 462.6 258 88.4
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 2.9e-120 436.8 274 81.8
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.4e-114 417.9 259 82.6
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.5e-103 380.6 252 78.2
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 9.4e-103 378.6 251 77.7
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 2.4e-98 364.0 554 44.0
vmacro15991 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.6e-92 344.0 322 58.1
Gohir.A12G174201 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.0e-88 332.0 174 91.4
Cpa.g.sc34.43 Carica papaya HOM05D003504 ORTHO05D004006 7.2e-71 272.7 144 88.9
Peaxi162Scf00280g00008 Petunia axillaris HOM05D003504 ORTHO05D004006 7.2e-71 272.7 228 65.8
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 3.0e-69 267.3 145 91.0
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 8.3e-67 259.2 202 70.3
CDE09G0213 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 3.7e-43 180.6 91 91.2
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.1e-42 179.1 103 87.4
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.9e-35 154.5 133 64.7
QL04p084884 Quercus lobata HOM05D003504 ORTHO05D004006 4.9e-35 153.7 77 92.2
Lsat_1_v5_gn_7_41641 Lactuca sativa HOM05D003504 ORTHO05D004006 3.6e-22 110.9 74 78.4
Phvul.011G172400 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 1.5e-20 105.5 49 95.9
QL04p085078 Quercus lobata HOM05D003504 ORTHO05D004006 3.2e-18 97.8 79 64.6
Lsat_1_v5_gn_3_41440 Lactuca sativa HOM05D003504 ORTHO05D004006 1.3e-16 92.4 60 78.3
vmacro15990 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.3e-16 92.4 49 95.9
Haze_18583 Corylus avellana HOM05D002115 ORTHO05D002263 1.9e-15 88.6 46 91.3
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.3e-14 85.9 55 81.8
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.6e-14 85.5 80 60.0
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 3.4e-12 77.8 53 67.9
Lsat_1_v5_gn_1_87860 Lactuca sativa HOM05D002142 ORTHO05D001189 3.4e-12 77.8 68 64.7
unitig_0.g393 Utricularia gibba HOM05D003504 ORTHO05D004006 7.6e-12 76.6 62 64.5
Lsat_1_v5_gn_5_53440 Lactuca sativa HOM05D003504 ORTHO05D004006 3.5e-09 67.8 62 64.5
QL04p085886 Quercus lobata HOM05D003504 ORTHO05D004006 4.6e-09 67.4 69 55.1
AagrBONN_evm.TU.Sc2ySwM_344.764 Anthoceros agrestis HOM05D003504 ORTHO05D004006 6.0e-09 67.0 47 72.3


User provided reference genes

Program Settings